Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 98395 | 0.67 | 0.684852 |
Target: 5'- gGCGUGGGGGCGgg-CGCGGacuCUGGu- -3' miRNA: 3'- aUGCGCCCCUGCaugGCGCU---GACCuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 98350 | 0.69 | 0.563707 |
Target: 5'- gACGCGGGGGCGggggugGgCGCGGgcuCUGGc- -3' miRNA: 3'- aUGCGCCCCUGCa-----UgGCGCU---GACCuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 98104 | 0.66 | 0.734301 |
Target: 5'- gGCGCGGcGGGCGg--CGaGGCUGGGGa -3' miRNA: 3'- aUGCGCC-CCUGCaugGCgCUGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 98054 | 0.67 | 0.668749 |
Target: 5'- -cCGCGGGcGGCGggACCGCGGgcggcggguguguccUUGGAGa -3' miRNA: 3'- auGCGCCC-CUGCa-UGGCGCU---------------GACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 98005 | 0.73 | 0.355919 |
Target: 5'- gGCgGCGGGGGCGcugGCgGCGagGCUGGAGa -3' miRNA: 3'- aUG-CGCCCCUGCa--UGgCGC--UGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 97179 | 0.68 | 0.593823 |
Target: 5'- -uCGCGGGcGcCGgccggGCCGCGGCcGGAAg -3' miRNA: 3'- auGCGCCC-CuGCa----UGGCGCUGaCCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 97099 | 0.71 | 0.430976 |
Target: 5'- gGC-CGGGGGCGccagccggGCCGCGGCcGGAGg -3' miRNA: 3'- aUGcGCCCCUGCa-------UGGCGCUGaCCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 96454 | 0.69 | 0.524235 |
Target: 5'- aGCgGCGGGGuacagaaggccGCGcuCCGCGGCUGGGGg -3' miRNA: 3'- aUG-CGCCCC-----------UGCauGGCGCUGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 95175 | 0.67 | 0.684852 |
Target: 5'- gGCGagGGGGACGUGCCccaGCc-CUGGGAc -3' miRNA: 3'- aUGCg-CCCCUGCAUGG---CGcuGACCUU- -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 90204 | 0.67 | 0.674798 |
Target: 5'- aGCGCGGGGGCGgcggagcGCCcucgcGCGGC-GGGc -3' miRNA: 3'- aUGCGCCCCUGCa------UGG-----CGCUGaCCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 88146 | 0.74 | 0.304216 |
Target: 5'- cGCGCGGGGGCGccccgGCCGCGcaGCcGGGc -3' miRNA: 3'- aUGCGCCCCUGCa----UGGCGC--UGaCCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 87890 | 0.66 | 0.71472 |
Target: 5'- gGCGCGGagagggcgggccGGGCGUACCGUGugUcugccgccacccGGGg -3' miRNA: 3'- aUGCGCC------------CCUGCAUGGCGCugA------------CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 75162 | 0.7 | 0.504892 |
Target: 5'- cGCGCGGcauGGAC-UACCGCGAC-GGGc -3' miRNA: 3'- aUGCGCC---CCUGcAUGGCGCUGaCCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 74918 | 0.67 | 0.684852 |
Target: 5'- cGCGCGGGGgagggcgaggACGgggACUGCGGCgcGGGc -3' miRNA: 3'- aUGCGCCCC----------UGCa--UGGCGCUGa-CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 74708 | 0.66 | 0.734301 |
Target: 5'- cGCGCGGGcGCGgaaccggGCCGCGGCa---- -3' miRNA: 3'- aUGCGCCCcUGCa------UGGCGCUGaccuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 71965 | 0.66 | 0.704821 |
Target: 5'- gGCGCGGGGcGCGgaGCgCGCGGCaGGu- -3' miRNA: 3'- aUGCGCCCC-UGCa-UG-GCGCUGaCCuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 71811 | 0.68 | 0.611009 |
Target: 5'- -cCGUGGGGACGUaggagacgggccacACCGCGGCg---- -3' miRNA: 3'- auGCGCCCCUGCA--------------UGGCGCUGaccuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 68958 | 0.66 | 0.703828 |
Target: 5'- cGCGCGGGGACcugGUgcgcgccACCGCGGCccuuuucGGGc -3' miRNA: 3'- aUGCGCCCCUG---CA-------UGGCGCUGa------CCUu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 68852 | 0.77 | 0.188582 |
Target: 5'- -cCGCGGGGACGcccucUGCCGCGGCUGu-- -3' miRNA: 3'- auGCGCCCCUGC-----AUGGCGCUGACcuu -5' |
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23813 | 5' | -59.4 | NC_005261.1 | + | 68087 | 0.75 | 0.264653 |
Target: 5'- -cCGCGGGGGCGgggagGCCGUgaaguucgGGCUGGAGc -3' miRNA: 3'- auGCGCCCCUGCa----UGGCG--------CUGACCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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