Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 98005 | 0.73 | 0.355919 |
Target: 5'- gGCgGCGGGGGCGcugGCgGCGagGCUGGAGa -3' miRNA: 3'- aUG-CGCCCCUGCa--UGgCGC--UGACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 20287 | 0.73 | 0.351253 |
Target: 5'- -uCGCGGGGGCGcGCUugcggcagaaaaacgGCGACUGGGc -3' miRNA: 3'- auGCGCCCCUGCaUGG---------------CGCUGACCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 132641 | 0.73 | 0.348167 |
Target: 5'- gACGCGGGcgcGGCGgcccuagcgGCCGCGugUGGGu -3' miRNA: 3'- aUGCGCCC---CUGCa--------UGGCGCugACCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 88146 | 0.74 | 0.304216 |
Target: 5'- cGCGCGGGGGCGccccgGCCGCGcaGCcGGGc -3' miRNA: 3'- aUGCGCCCCUGCa----UGGCGC--UGaCCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 68087 | 0.75 | 0.264653 |
Target: 5'- -cCGCGGGGGCGgggagGCCGUgaaguucgGGCUGGAGc -3' miRNA: 3'- auGCGCCCCUGCa----UGGCG--------CUGACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 36578 | 0.7 | 0.476476 |
Target: 5'- --aGCGGGGGCccGCCGCGGCcaccgGGGGg -3' miRNA: 3'- augCGCCCCUGcaUGGCGCUGa----CCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 75162 | 0.7 | 0.504892 |
Target: 5'- cGCGCGGcauGGAC-UACCGCGAC-GGGc -3' miRNA: 3'- aUGCGCC---CCUGcAUGGCGCUGaCCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 118850 | 0.68 | 0.624184 |
Target: 5'- gGCGCGGaGGGCGgcgcgcCCGCGGCccUGGc- -3' miRNA: 3'- aUGCGCC-CCUGCau----GGCGCUG--ACCuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 71811 | 0.68 | 0.611009 |
Target: 5'- -cCGUGGGGACGUaggagacgggccacACCGCGGCg---- -3' miRNA: 3'- auGCGCCCCUGCA--------------UGGCGCUGaccuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 97179 | 0.68 | 0.593823 |
Target: 5'- -uCGCGGGcGcCGgccggGCCGCGGCcGGAAg -3' miRNA: 3'- auGCGCCC-CuGCa----UGGCGCUGaCCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 47618 | 0.68 | 0.583748 |
Target: 5'- -cUGCGGGGGCG-GCCGCGGCc---- -3' miRNA: 3'- auGCGCCCCUGCaUGGCGCUGaccuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 8842 | 0.68 | 0.583748 |
Target: 5'- gGgGCGGGGACagGCCGUGGgaGGGg -3' miRNA: 3'- aUgCGCCCCUGcaUGGCGCUgaCCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 98350 | 0.69 | 0.563707 |
Target: 5'- gACGCGGGGGCGggggugGgCGCGGgcuCUGGc- -3' miRNA: 3'- aUGCGCCCCUGCa-----UgGCGCU---GACCuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 120968 | 0.69 | 0.553754 |
Target: 5'- -cCGCGGGGcGCGUGCCGCcGCaGGc- -3' miRNA: 3'- auGCGCCCC-UGCAUGGCGcUGaCCuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 28786 | 0.69 | 0.553754 |
Target: 5'- gGCGCGGGcgcuCGcgGCCGCGGC-GGAGg -3' miRNA: 3'- aUGCGCCCcu--GCa-UGGCGCUGaCCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 29464 | 0.69 | 0.553754 |
Target: 5'- gACGCGGGGAagcaGUA-CGCGGCgcuggUGGAc -3' miRNA: 3'- aUGCGCCCCUg---CAUgGCGCUG-----ACCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 23629 | 0.69 | 0.543854 |
Target: 5'- gGCGCGGcGGGgGUcggGCGGCUGGAAg -3' miRNA: 3'- aUGCGCC-CCUgCAuggCGCUGACCUU- -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 107694 | 0.69 | 0.540895 |
Target: 5'- cGCgGCGGGGGCGccgccgaacgucgcUGCCGCGGCaGGc- -3' miRNA: 3'- aUG-CGCCCCUGC--------------AUGGCGCUGaCCuu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 113540 | 0.69 | 0.524235 |
Target: 5'- gGCuCGGGGcCGUGCgCGCG-CUGGAc -3' miRNA: 3'- aUGcGCCCCuGCAUG-GCGCuGACCUu -5' |
|||||||
23813 | 5' | -59.4 | NC_005261.1 | + | 96454 | 0.69 | 0.524235 |
Target: 5'- aGCgGCGGGGuacagaaggccGCGcuCCGCGGCUGGGGg -3' miRNA: 3'- aUG-CGCCCC-----------UGCauGGCGCUGACCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home