miRNA display CGI


Results 41 - 60 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 31307 0.79 0.191774
Target:  5'- cGCCGCGcgGgGCCCgCGGGCGCGCUCGc- -3'
miRNA:   3'- -CGGCGC--UgCGGG-GCUUGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 75858 0.79 0.206445
Target:  5'- cGCCGaCGGCgGCCCCGAcggcgccguggGCGCGCgCAGCg -3'
miRNA:   3'- -CGGC-GCUG-CGGGGCU-----------UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 11946 0.79 0.216758
Target:  5'- cGCCGCGGCggcucGCCCgGcGCGCGCUcCAGCg -3'
miRNA:   3'- -CGGCGCUG-----CGGGgCuUGCGUGA-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 1802 0.78 0.222078
Target:  5'- aGCgGCGGCGCCCCGGgguagagccGCGCGuaagcggcCUCGGCg -3'
miRNA:   3'- -CGgCGCUGCGGGGCU---------UGCGU--------GAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 10518 0.78 0.222078
Target:  5'- cGCUGCGG-GCCCCGcGGCGCGCUCGc- -3'
miRNA:   3'- -CGGCGCUgCGGGGC-UUGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 70812 0.78 0.227508
Target:  5'- uCCGCGccgGCgGCCCCGGGCGCGC-CGGCg -3'
miRNA:   3'- cGGCGC---UG-CGGGGCUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 76029 0.83 0.11859
Target:  5'- cGCCGCgGGCGCCCCGcGCGCcaUCAGCg -3'
miRNA:   3'- -CGGCG-CUGCGGGGCuUGCGugAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 100720 0.78 0.233051
Target:  5'- aGCCGCGGcCGCgCCGcGCGCGCgcgCGGCg -3'
miRNA:   3'- -CGGCGCU-GCGgGGCuUGCGUGa--GUUG- -5'
23814 3' -57.7 NC_005261.1 + 49088 0.78 0.233051
Target:  5'- cGCCGCGG-GCCCgcUGAGCGCGCgCAGCa -3'
miRNA:   3'- -CGGCGCUgCGGG--GCUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 132362 0.78 0.233051
Target:  5'- cGCCGCGGCGCgCUCGc-CGCGCUCGcgGCg -3'
miRNA:   3'- -CGGCGCUGCG-GGGCuuGCGUGAGU--UG- -5'
23814 3' -57.7 NC_005261.1 + 130132 0.78 0.236998
Target:  5'- cGCCGCG-CGCCguccgCCGAGCGCACcacguccuccaccgUCAGCg -3'
miRNA:   3'- -CGGCGCuGCGG-----GGCUUGCGUG--------------AGUUG- -5'
23814 3' -57.7 NC_005261.1 + 90060 0.77 0.256364
Target:  5'- aGCCaGCGGCGCCCCGcGgGCGCcgagggCAGCg -3'
miRNA:   3'- -CGG-CGCUGCGGGGCuUgCGUGa-----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 127492 0.77 0.275077
Target:  5'- cGCUgGCGGCuGCCugCCGGGCGUACUCGGCg -3'
miRNA:   3'- -CGG-CGCUG-CGG--GGCUUGCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 12988 0.77 0.277653
Target:  5'- gGCCGCGACGcCgauuaggcccgcgagCCCGAGCGCGCccccCAGCa -3'
miRNA:   3'- -CGGCGCUGC-G---------------GGGCUUGCGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 101640 0.77 0.281553
Target:  5'- gGCCGCGuCGCgCCGcacCGUGCUCAGCa -3'
miRNA:   3'- -CGGCGCuGCGgGGCuu-GCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 30968 0.76 0.294867
Target:  5'- cGCCGCGACGgCCCGccgcggcgcaAGCGCAagUCGGCc -3'
miRNA:   3'- -CGGCGCUGCgGGGC----------UUGCGUg-AGUUG- -5'
23814 3' -57.7 NC_005261.1 + 110326 0.76 0.294867
Target:  5'- aCCGCGcCGCCgCGGACGCGCUgcGCg -3'
miRNA:   3'- cGGCGCuGCGGgGCUUGCGUGAguUG- -5'
23814 3' -57.7 NC_005261.1 + 123016 0.76 0.294867
Target:  5'- gGCCGUGGCGUCCgCGAGCGUcggCAGCa -3'
miRNA:   3'- -CGGCGCUGCGGG-GCUUGCGugaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 67300 0.76 0.300328
Target:  5'- cGCCGCGcgcGCGCCgCCGucggccgccgcCGCGCUCAGCc -3'
miRNA:   3'- -CGGCGC---UGCGG-GGCuu---------GCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 88478 0.76 0.301705
Target:  5'- gGCCGUGcCGCgCCGGAgcgcgcCGCGCUCGACc -3'
miRNA:   3'- -CGGCGCuGCGgGGCUU------GCGUGAGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.