Results 41 - 60 of 561 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23814 | 3' | -57.7 | NC_005261.1 | + | 31307 | 0.79 | 0.191774 |
Target: 5'- cGCCGCGcgGgGCCCgCGGGCGCGCUCGc- -3' miRNA: 3'- -CGGCGC--UgCGGG-GCUUGCGUGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 75858 | 0.79 | 0.206445 |
Target: 5'- cGCCGaCGGCgGCCCCGAcggcgccguggGCGCGCgCAGCg -3' miRNA: 3'- -CGGC-GCUG-CGGGGCU-----------UGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 11946 | 0.79 | 0.216758 |
Target: 5'- cGCCGCGGCggcucGCCCgGcGCGCGCUcCAGCg -3' miRNA: 3'- -CGGCGCUG-----CGGGgCuUGCGUGA-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 1802 | 0.78 | 0.222078 |
Target: 5'- aGCgGCGGCGCCCCGGgguagagccGCGCGuaagcggcCUCGGCg -3' miRNA: 3'- -CGgCGCUGCGGGGCU---------UGCGU--------GAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 10518 | 0.78 | 0.222078 |
Target: 5'- cGCUGCGG-GCCCCGcGGCGCGCUCGc- -3' miRNA: 3'- -CGGCGCUgCGGGGC-UUGCGUGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 70812 | 0.78 | 0.227508 |
Target: 5'- uCCGCGccgGCgGCCCCGGGCGCGC-CGGCg -3' miRNA: 3'- cGGCGC---UG-CGGGGCUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 76029 | 0.83 | 0.11859 |
Target: 5'- cGCCGCgGGCGCCCCGcGCGCcaUCAGCg -3' miRNA: 3'- -CGGCG-CUGCGGGGCuUGCGugAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 100720 | 0.78 | 0.233051 |
Target: 5'- aGCCGCGGcCGCgCCGcGCGCGCgcgCGGCg -3' miRNA: 3'- -CGGCGCU-GCGgGGCuUGCGUGa--GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 49088 | 0.78 | 0.233051 |
Target: 5'- cGCCGCGG-GCCCgcUGAGCGCGCgCAGCa -3' miRNA: 3'- -CGGCGCUgCGGG--GCUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 132362 | 0.78 | 0.233051 |
Target: 5'- cGCCGCGGCGCgCUCGc-CGCGCUCGcgGCg -3' miRNA: 3'- -CGGCGCUGCG-GGGCuuGCGUGAGU--UG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 130132 | 0.78 | 0.236998 |
Target: 5'- cGCCGCG-CGCCguccgCCGAGCGCACcacguccuccaccgUCAGCg -3' miRNA: 3'- -CGGCGCuGCGG-----GGCUUGCGUG--------------AGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 90060 | 0.77 | 0.256364 |
Target: 5'- aGCCaGCGGCGCCCCGcGgGCGCcgagggCAGCg -3' miRNA: 3'- -CGG-CGCUGCGGGGCuUgCGUGa-----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 127492 | 0.77 | 0.275077 |
Target: 5'- cGCUgGCGGCuGCCugCCGGGCGUACUCGGCg -3' miRNA: 3'- -CGG-CGCUG-CGG--GGCUUGCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 12988 | 0.77 | 0.277653 |
Target: 5'- gGCCGCGACGcCgauuaggcccgcgagCCCGAGCGCGCccccCAGCa -3' miRNA: 3'- -CGGCGCUGC-G---------------GGGCUUGCGUGa---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 101640 | 0.77 | 0.281553 |
Target: 5'- gGCCGCGuCGCgCCGcacCGUGCUCAGCa -3' miRNA: 3'- -CGGCGCuGCGgGGCuu-GCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 30968 | 0.76 | 0.294867 |
Target: 5'- cGCCGCGACGgCCCGccgcggcgcaAGCGCAagUCGGCc -3' miRNA: 3'- -CGGCGCUGCgGGGC----------UUGCGUg-AGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 110326 | 0.76 | 0.294867 |
Target: 5'- aCCGCGcCGCCgCGGACGCGCUgcGCg -3' miRNA: 3'- cGGCGCuGCGGgGCUUGCGUGAguUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 123016 | 0.76 | 0.294867 |
Target: 5'- gGCCGUGGCGUCCgCGAGCGUcggCAGCa -3' miRNA: 3'- -CGGCGCUGCGGG-GCUUGCGugaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 67300 | 0.76 | 0.300328 |
Target: 5'- cGCCGCGcgcGCGCCgCCGucggccgccgcCGCGCUCAGCc -3' miRNA: 3'- -CGGCGC---UGCGG-GGCuu---------GCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 88478 | 0.76 | 0.301705 |
Target: 5'- gGCCGUGcCGCgCCGGAgcgcgcCGCGCUCGACc -3' miRNA: 3'- -CGGCGCuGCGgGGCUU------GCGUGAGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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