Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23814 | 5' | -57 | NC_005261.1 | + | 83752 | 0.66 | 0.823394 |
Target: 5'- -gGUGGCGgcGCGCCacggCCGGGUcgCAGc -3' miRNA: 3'- gaCGUCGCa-CGCGGa---GGUCCAuaGUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 29577 | 0.66 | 0.814607 |
Target: 5'- gCUGCAGCG-GCGCgUgCAGGg----- -3' miRNA: 3'- -GACGUCGCaCGCGgAgGUCCauaguu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 99238 | 0.66 | 0.796524 |
Target: 5'- -cGuCGGCGUcGCGCCcgCCGGGccgcgUAUCAAa -3' miRNA: 3'- gaC-GUCGCA-CGCGGa-GGUCC-----AUAGUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 104894 | 0.66 | 0.787246 |
Target: 5'- -cGCcGCGUGCGCCcggacgcccUCCAGGgccgCGGu -3' miRNA: 3'- gaCGuCGCACGCGG---------AGGUCCaua-GUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 80890 | 0.67 | 0.777822 |
Target: 5'- gCUuCAGCG-GCGCCUCCcAGGgGUCc- -3' miRNA: 3'- -GAcGUCGCaCGCGGAGG-UCCaUAGuu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 103205 | 0.67 | 0.768263 |
Target: 5'- -cGCGGCG-GCGCCUCCugcAGGa----- -3' miRNA: 3'- gaCGUCGCaCGCGGAGG---UCCauaguu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 103314 | 0.67 | 0.758577 |
Target: 5'- cCUGCAGCGgcagcagcaGCGCgUCCAGGc----- -3' miRNA: 3'- -GACGUCGCa--------CGCGgAGGUCCauaguu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 15289 | 0.67 | 0.738865 |
Target: 5'- -gGCGcGCGgucGCgGCCUCCGGGUcGUCGGa -3' miRNA: 3'- gaCGU-CGCa--CG-CGGAGGUCCA-UAGUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 120444 | 0.68 | 0.719779 |
Target: 5'- -cGCGGCGUGCGCCUgcucuccgcgauagaCGGGcccGUCGAc -3' miRNA: 3'- gaCGUCGCACGCGGAg--------------GUCCa--UAGUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 58372 | 0.68 | 0.718765 |
Target: 5'- gUGCGGCGacGUcgGCCUCCAGGg--CGAa -3' miRNA: 3'- gACGUCGCa-CG--CGGAGGUCCauaGUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 47116 | 0.68 | 0.688061 |
Target: 5'- gUGaGGaCGUGCGCgUCCAGGUcGUCGc -3' miRNA: 3'- gACgUC-GCACGCGgAGGUCCA-UAGUu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 1799 | 0.68 | 0.677716 |
Target: 5'- -cGCAGCGgcgGCGCC-CCGGGg----- -3' miRNA: 3'- gaCGUCGCa--CGCGGaGGUCCauaguu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 115358 | 0.69 | 0.624546 |
Target: 5'- -cGCAcGCuGUGCGCCUCCAcGGUugccggcGUCGu -3' miRNA: 3'- gaCGU-CG-CACGCGGAGGU-CCA-------UAGUu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 124757 | 0.7 | 0.583927 |
Target: 5'- -cGCAGCG-GcCGCCUCCAGGcUGagGAg -3' miRNA: 3'- gaCGUCGCaC-GCGGAGGUCC-AUagUU- -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 100499 | 0.71 | 0.542838 |
Target: 5'- -aGCGGCGUGCcgucgGCgUCCAGGUAg--- -3' miRNA: 3'- gaCGUCGCACG-----CGgAGGUCCAUaguu -5' |
|||||||
23814 | 5' | -57 | NC_005261.1 | + | 90230 | 0.73 | 0.408977 |
Target: 5'- -cGCGGCGggcgggcGCGCCgUCGGGUAUCAGg -3' miRNA: 3'- gaCGUCGCa------CGCGGaGGUCCAUAGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home