miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 5' -57 NC_005261.1 + 83752 0.66 0.823394
Target:  5'- -gGUGGCGgcGCGCCacggCCGGGUcgCAGc -3'
miRNA:   3'- gaCGUCGCa-CGCGGa---GGUCCAuaGUU- -5'
23814 5' -57 NC_005261.1 + 29577 0.66 0.814607
Target:  5'- gCUGCAGCG-GCGCgUgCAGGg----- -3'
miRNA:   3'- -GACGUCGCaCGCGgAgGUCCauaguu -5'
23814 5' -57 NC_005261.1 + 99238 0.66 0.796524
Target:  5'- -cGuCGGCGUcGCGCCcgCCGGGccgcgUAUCAAa -3'
miRNA:   3'- gaC-GUCGCA-CGCGGa-GGUCC-----AUAGUU- -5'
23814 5' -57 NC_005261.1 + 104894 0.66 0.787246
Target:  5'- -cGCcGCGUGCGCCcggacgcccUCCAGGgccgCGGu -3'
miRNA:   3'- gaCGuCGCACGCGG---------AGGUCCaua-GUU- -5'
23814 5' -57 NC_005261.1 + 80890 0.67 0.777822
Target:  5'- gCUuCAGCG-GCGCCUCCcAGGgGUCc- -3'
miRNA:   3'- -GAcGUCGCaCGCGGAGG-UCCaUAGuu -5'
23814 5' -57 NC_005261.1 + 103205 0.67 0.768263
Target:  5'- -cGCGGCG-GCGCCUCCugcAGGa----- -3'
miRNA:   3'- gaCGUCGCaCGCGGAGG---UCCauaguu -5'
23814 5' -57 NC_005261.1 + 103314 0.67 0.758577
Target:  5'- cCUGCAGCGgcagcagcaGCGCgUCCAGGc----- -3'
miRNA:   3'- -GACGUCGCa--------CGCGgAGGUCCauaguu -5'
23814 5' -57 NC_005261.1 + 15289 0.67 0.738865
Target:  5'- -gGCGcGCGgucGCgGCCUCCGGGUcGUCGGa -3'
miRNA:   3'- gaCGU-CGCa--CG-CGGAGGUCCA-UAGUU- -5'
23814 5' -57 NC_005261.1 + 120444 0.68 0.719779
Target:  5'- -cGCGGCGUGCGCCUgcucuccgcgauagaCGGGcccGUCGAc -3'
miRNA:   3'- gaCGUCGCACGCGGAg--------------GUCCa--UAGUU- -5'
23814 5' -57 NC_005261.1 + 58372 0.68 0.718765
Target:  5'- gUGCGGCGacGUcgGCCUCCAGGg--CGAa -3'
miRNA:   3'- gACGUCGCa-CG--CGGAGGUCCauaGUU- -5'
23814 5' -57 NC_005261.1 + 47116 0.68 0.688061
Target:  5'- gUGaGGaCGUGCGCgUCCAGGUcGUCGc -3'
miRNA:   3'- gACgUC-GCACGCGgAGGUCCA-UAGUu -5'
23814 5' -57 NC_005261.1 + 1799 0.68 0.677716
Target:  5'- -cGCAGCGgcgGCGCC-CCGGGg----- -3'
miRNA:   3'- gaCGUCGCa--CGCGGaGGUCCauaguu -5'
23814 5' -57 NC_005261.1 + 115358 0.69 0.624546
Target:  5'- -cGCAcGCuGUGCGCCUCCAcGGUugccggcGUCGu -3'
miRNA:   3'- gaCGU-CG-CACGCGGAGGU-CCA-------UAGUu -5'
23814 5' -57 NC_005261.1 + 124757 0.7 0.583927
Target:  5'- -cGCAGCG-GcCGCCUCCAGGcUGagGAg -3'
miRNA:   3'- gaCGUCGCaC-GCGGAGGUCC-AUagUU- -5'
23814 5' -57 NC_005261.1 + 100499 0.71 0.542838
Target:  5'- -aGCGGCGUGCcgucgGCgUCCAGGUAg--- -3'
miRNA:   3'- gaCGUCGCACG-----CGgAGGUCCAUaguu -5'
23814 5' -57 NC_005261.1 + 90230 0.73 0.408977
Target:  5'- -cGCGGCGggcgggcGCGCCgUCGGGUAUCAGg -3'
miRNA:   3'- gaCGUCGCa------CGCGGaGGUCCAUAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.