Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23815 | 3' | -60.7 | NC_005261.1 | + | 33755 | 0.71 | 0.419226 |
Target: 5'- cGGGGCCggGCCCGcUCGcggGGcCcGCGg -3' miRNA: 3'- -CCCCGGuaCGGGC-AGCa--CCaGaCGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 68873 | 0.7 | 0.436503 |
Target: 5'- -cGGCUGUGCgCCGUCGUGcG-CUGCGc -3' miRNA: 3'- ccCCGGUACG-GGCAGCAC-CaGACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 11912 | 0.7 | 0.472242 |
Target: 5'- cGGGCCcgGCCCGgcCGgcGG-CUGCGg -3' miRNA: 3'- cCCCGGuaCGGGCa-GCa-CCaGACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 66324 | 0.68 | 0.547732 |
Target: 5'- aGGcGGCCGUGCagCCcaCGaGGUCUGCGa -3' miRNA: 3'- -CC-CCGGUACG--GGcaGCaCCAGACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 113544 | 0.68 | 0.567242 |
Target: 5'- cGGGGCCGUGCgcgcgcuggaCCGcgagcaGUGGUCgGUGg -3' miRNA: 3'- -CCCCGGUACG----------GGCag----CACCAGaCGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 42030 | 0.68 | 0.577064 |
Target: 5'- cGGGCaugGcCCCGUCGcGGUaCUGCGc -3' miRNA: 3'- cCCCGguaC-GGGCAGCaCCA-GACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 58552 | 0.68 | 0.577064 |
Target: 5'- cGGGCUccUGCgCCGUCGUGG-CcGCGa -3' miRNA: 3'- cCCCGGu-ACG-GGCAGCACCaGaCGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 45383 | 0.68 | 0.596815 |
Target: 5'- cGGGGCCgcccuguucGUGCagCUGUCGUGccugCUGCGg -3' miRNA: 3'- -CCCCGG---------UACG--GGCAGCACca--GACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 109500 | 0.67 | 0.60673 |
Target: 5'- cGGGGCCcgcGCCCGcCGcggGGUUuauUGCGc -3' miRNA: 3'- -CCCCGGua-CGGGCaGCa--CCAG---ACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 105225 | 0.67 | 0.60673 |
Target: 5'- cGGGCCGcgGCCgCGgcCGUGaUCUGCGg -3' miRNA: 3'- cCCCGGUa-CGG-GCa-GCACcAGACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 92775 | 0.67 | 0.656434 |
Target: 5'- cGGGCCGaGCCCGggcUCGgGGUCgGgGUc -3' miRNA: 3'- cCCCGGUaCGGGC---AGCaCCAGaCgCA- -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 76130 | 0.66 | 0.666349 |
Target: 5'- --cGCCGgcGCCCGUCGUggaGGUCgugGCGg -3' miRNA: 3'- cccCGGUa-CGGGCAGCA---CCAGa--CGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 68288 | 0.66 | 0.686094 |
Target: 5'- cGGGGCCccgGCCgCGggCGcGGaccUCUGCGg -3' miRNA: 3'- -CCCCGGua-CGG-GCa-GCaCC---AGACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 47099 | 0.66 | 0.715374 |
Target: 5'- cGGGCCAgaGCCCGUCcGUGaGgacgUGCGc -3' miRNA: 3'- cCCCGGUa-CGGGCAG-CAC-Cag--ACGCa -5' |
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23815 | 3' | -60.7 | NC_005261.1 | + | 121194 | 0.66 | 0.715374 |
Target: 5'- cGGGGCCggGCCCGgggcCGcGGgccggagaCUGCa- -3' miRNA: 3'- -CCCCGGuaCGGGCa---GCaCCa-------GACGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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