miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23816 3' -57.1 NC_005261.1 + 90238 0.69 0.678952
Target:  5'- gCgggCGCGCCGUcGGGUaucaGGGCGCCa- -3'
miRNA:   3'- aGaa-GUGUGGCGcUCCA----UCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 94271 0.67 0.768364
Target:  5'- ----gGCGCCGCGAGGcucuuGGCGCa-- -3'
miRNA:   3'- agaagUGUGGCGCUCCau---CCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 99003 0.66 0.805306
Target:  5'- aUCUUCAgCGUCGCGAGcGgcGGCGCg-- -3'
miRNA:   3'- -AGAAGU-GUGGCGCUC-CauCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 103914 0.67 0.796288
Target:  5'- ---cCGCGCCGCcAGGUcGGGCGCg-- -3'
miRNA:   3'- agaaGUGUGGCGcUCCA-UCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 109328 0.67 0.749116
Target:  5'- gCgagCGCgGCCGCGGGGUcGGCgGCCg- -3'
miRNA:   3'- aGaa-GUG-UGGCGCUCCAuCCG-CGGau -5'
23816 3' -57.1 NC_005261.1 + 118913 0.67 0.796288
Target:  5'- gUCUgggUCcgGCGCCGCGGGcgcGGCGCCg- -3'
miRNA:   3'- -AGA---AG--UGUGGCGCUCcauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 119903 0.68 0.709442
Target:  5'- --cUgGCGCCGCGAcGcGGGCGCCa- -3'
miRNA:   3'- agaAgUGUGGCGCUcCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 120300 0.66 0.839698
Target:  5'- uUCUUCGaggGCgGCGAGGcugucugcgAGGCGCgCUGc -3'
miRNA:   3'- -AGAAGUg--UGgCGCUCCa--------UCCGCG-GAU- -5'
23816 3' -57.1 NC_005261.1 + 121376 0.67 0.787119
Target:  5'- aCUgcaggCGCcCCGCGGcGgcGGCGCCUGc -3'
miRNA:   3'- aGAa----GUGuGGCGCUcCauCCGCGGAU- -5'
23816 3' -57.1 NC_005261.1 + 124241 0.67 0.787119
Target:  5'- ---cCGcCGCCGCG-GGcAGGCGCCg- -3'
miRNA:   3'- agaaGU-GUGGCGCuCCaUCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 125532 0.72 0.477012
Target:  5'- --cUCGCGCCGCccgcAGGgcGGCGCCa- -3'
miRNA:   3'- agaAGUGUGGCGc---UCCauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 126759 0.67 0.787119
Target:  5'- ----gGCACCGCcAGGUAcauGGCGCCc- -3'
miRNA:   3'- agaagUGUGGCGcUCCAU---CCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 129612 0.69 0.637791
Target:  5'- aUUUCGCG--GCGGGGUcGGGCGCCUu -3'
miRNA:   3'- aGAAGUGUggCGCUCCA-UCCGCGGAu -5'
23816 3' -57.1 NC_005261.1 + 132545 0.67 0.749116
Target:  5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3'
miRNA:   3'- agaAGUGUgGCGCUCCa--UCCGCGgau -5'
23816 3' -57.1 NC_005261.1 + 132886 0.7 0.627469
Target:  5'- uUCUUCggcaagccggGCGCCGCGGGc--GGCGCCg- -3'
miRNA:   3'- -AGAAG----------UGUGGCGCUCcauCCGCGGau -5'
23816 3' -57.1 NC_005261.1 + 134356 0.7 0.617149
Target:  5'- ---cCGCGCCGCcgcgcgGGGGgcGGCGCCg- -3'
miRNA:   3'- agaaGUGUGGCG------CUCCauCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.