miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23816 5' -58.4 NC_005261.1 + 112617 0.66 0.82081
Target:  5'- aCCGCGCcucGCACCUCAGccggcugcacggcccGGccuucgcaGCCGAGu -3'
miRNA:   3'- aGGUGCG---CGUGGAGUU---------------CCag------CGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 69280 0.66 0.817413
Target:  5'- gCCGCcCGCGCCgaccccggcgCGGGG-CGCCGGu -3'
miRNA:   3'- aGGUGcGCGUGGa---------GUUCCaGCGGCUc -5'
23816 5' -58.4 NC_005261.1 + 2371 0.66 0.817413
Target:  5'- gCCACGCGcCGCCgCAGcGGcgCGCUGGc -3'
miRNA:   3'- aGGUGCGC-GUGGaGUU-CCa-GCGGCUc -5'
23816 5' -58.4 NC_005261.1 + 125532 0.66 0.817413
Target:  5'- cUCGCGC-CGCCcgCAGGGcggCGCCaGAGg -3'
miRNA:   3'- aGGUGCGcGUGGa-GUUCCa--GCGG-CUC- -5'
23816 5' -58.4 NC_005261.1 + 39523 0.66 0.817413
Target:  5'- cCCGggcCGCGCGCCUCuacgcGGcCGCCa-- -3'
miRNA:   3'- aGGU---GCGCGUGGAGuu---CCaGCGGcuc -5'
23816 5' -58.4 NC_005261.1 + 12530 0.66 0.812269
Target:  5'- cCCGCGC-CGCCgccgaauuuauacgCGGGGgccccgCGCCGGGc -3'
miRNA:   3'- aGGUGCGcGUGGa-------------GUUCCa-----GCGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 99522 0.66 0.808807
Target:  5'- cCCguuGCGUGCACCgUCGAGGgcgCGUCcAGg -3'
miRNA:   3'- aGG---UGCGCGUGG-AGUUCCa--GCGGcUC- -5'
23816 5' -58.4 NC_005261.1 + 40671 0.66 0.808807
Target:  5'- cUCCGCGaCGC-CgUCGGGGagccggCGCCGGc -3'
miRNA:   3'- -AGGUGC-GCGuGgAGUUCCa-----GCGGCUc -5'
23816 5' -58.4 NC_005261.1 + 5539 0.66 0.808807
Target:  5'- uUCgGCGCGCAgCgagaCGGGGggCGcCCGAGc -3'
miRNA:   3'- -AGgUGCGCGUgGa---GUUCCa-GC-GGCUC- -5'
23816 5' -58.4 NC_005261.1 + 39764 0.66 0.808807
Target:  5'- cUCC-UGCaggaugGCCUCGAGGacgUCGCCGGGg -3'
miRNA:   3'- -AGGuGCGcg----UGGAGUUCC---AGCGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 116547 0.66 0.803569
Target:  5'- gCC-CGCGCGCgUCAuacaagggaaagcggAGGcgacgaCGCCGAGg -3'
miRNA:   3'- aGGuGCGCGUGgAGU---------------UCCa-----GCGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 33653 0.66 0.80269
Target:  5'- cCCGCGCGCGCCgaUuucggccccccccCAaaaaacacccccccgGGGUCGCgCGGGg -3'
miRNA:   3'- aGGUGCGCGUGG--A-------------GU---------------UCCAGCG-GCUC- -5'
23816 5' -58.4 NC_005261.1 + 16245 0.66 0.800046
Target:  5'- gUCgACGUccGCGCCg--GGGcCGCCGGGg -3'
miRNA:   3'- -AGgUGCG--CGUGGaguUCCaGCGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 81297 0.66 0.800046
Target:  5'- gCgGCGCGCACgUCcgugccguugucGGGGUCGUCGc- -3'
miRNA:   3'- aGgUGCGCGUGgAG------------UUCCAGCGGCuc -5'
23816 5' -58.4 NC_005261.1 + 35469 0.66 0.800046
Target:  5'- -gCGCGCGCGCgUCccGGGGUCccuGCCGcGg -3'
miRNA:   3'- agGUGCGCGUGgAG--UUCCAG---CGGCuC- -5'
23816 5' -58.4 NC_005261.1 + 106753 0.66 0.800046
Target:  5'- cUCCGCGCcCGCCaCGAGcUUGCCGGc -3'
miRNA:   3'- -AGGUGCGcGUGGaGUUCcAGCGGCUc -5'
23816 5' -58.4 NC_005261.1 + 48045 0.66 0.800046
Target:  5'- -aCGCGCGCGCggUCGGGGcccgcggcccaCGCCGAGu -3'
miRNA:   3'- agGUGCGCGUGg-AGUUCCa----------GCGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 74266 0.66 0.797388
Target:  5'- uUCgCGCGCGCGCgUCcgcggcgggcggggcGGUCGCCGccGGg -3'
miRNA:   3'- -AG-GUGCGCGUGgAGuu-------------CCAGCGGC--UC- -5'
23816 5' -58.4 NC_005261.1 + 41168 0.66 0.791136
Target:  5'- gUCCACGCG-GCC-C-GGGUCcagGCCGGGc -3'
miRNA:   3'- -AGGUGCGCgUGGaGuUCCAG---CGGCUC- -5'
23816 5' -58.4 NC_005261.1 + 80569 0.66 0.791136
Target:  5'- uUCCGCGagacagGCuCCUUGAGG-CGCCGGc -3'
miRNA:   3'- -AGGUGCg-----CGuGGAGUUCCaGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.