miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 82383 0.66 0.966909
Target:  5'- --cGCCAGCgccgcccaGCcCGCGGGGCCGUc- -3'
miRNA:   3'- uaaUGGUUGa-------UGaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 39344 0.66 0.966909
Target:  5'- --gGCCaAGCUGCgCGCGGcggcAGCCGCc- -3'
miRNA:   3'- uaaUGG-UUGAUGaGCGUC----UCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 68758 0.66 0.966909
Target:  5'- --cGCCGggGC-GC-CGCGGAGCCGCc- -3'
miRNA:   3'- uaaUGGU--UGaUGaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 59097 0.66 0.963527
Target:  5'- --cGCCcucGC-GCUCGCAGGcGCgCGCGAg -3'
miRNA:   3'- uaaUGGu--UGaUGAGCGUCU-CG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 118163 0.66 0.963527
Target:  5'- --gGCCGucgcgGCgggGCUUGCcgucuGGGCCGCGGg -3'
miRNA:   3'- uaaUGGU-----UGa--UGAGCGu----CUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 3434 0.66 0.963527
Target:  5'- --gGCCAGCguccagGCgggCGCGcGGGCCGCc- -3'
miRNA:   3'- uaaUGGUUGa-----UGa--GCGU-CUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 118207 0.66 0.963527
Target:  5'- -cUGCCGcGCUGCgcggggCGCuGAcgGCCGCGGc -3'
miRNA:   3'- uaAUGGU-UGAUGa-----GCGuCU--CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 23892 0.66 0.963176
Target:  5'- --gGCCGGCUaggguggGCUCGCuGGGCUGgGc -3'
miRNA:   3'- uaaUGGUUGA-------UGAGCGuCUCGGCgCu -5'
23817 3' -52.8 NC_005261.1 + 13040 0.66 0.959911
Target:  5'- --aGCCAGgg---CGCGGGGCCGCGc -3'
miRNA:   3'- uaaUGGUUgaugaGCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 85706 0.66 0.959911
Target:  5'- --cACUuGCUGCcCGCAGAagauGCCGUGGc -3'
miRNA:   3'- uaaUGGuUGAUGaGCGUCU----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 64961 0.66 0.959911
Target:  5'- --cACUGugUACUCGUccacGAGCCGCc- -3'
miRNA:   3'- uaaUGGUugAUGAGCGu---CUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 218 0.66 0.959911
Target:  5'- --cGCCccuGgUGCUCGCGGGccCCGCGAg -3'
miRNA:   3'- uaaUGGu--UgAUGAGCGUCUc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 92281 0.66 0.959911
Target:  5'- uGUUGCuCAGCUGCUgcaCGUAGGccaggaugagcGCCGCGc -3'
miRNA:   3'- -UAAUG-GUUGAUGA---GCGUCU-----------CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 2730 0.66 0.959911
Target:  5'- --gGCCGACUugcGCUUGC---GCCGCGGc -3'
miRNA:   3'- uaaUGGUUGA---UGAGCGucuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 135078 0.66 0.959911
Target:  5'- ---uCCGGCggcggGCUCGCGGcccGGCgGCGGa -3'
miRNA:   3'- uaauGGUUGa----UGAGCGUC---UCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 137901 0.66 0.959911
Target:  5'- --cGCCccuGgUGCUCGCGGGccCCGCGAg -3'
miRNA:   3'- uaaUGGu--UgAUGAGCGUCUc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 30330 0.66 0.959911
Target:  5'- -gUGCCGGCgcgGCUgGC--GGCCGCGc -3'
miRNA:   3'- uaAUGGUUGa--UGAgCGucUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 34353 0.66 0.959911
Target:  5'- --gGCCGACggggccggGCgccgCGCGGcGCCGCGc -3'
miRNA:   3'- uaaUGGUUGa-------UGa---GCGUCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 74044 0.66 0.956054
Target:  5'- --gACCAGCgcGC-CGgGGGGCUGCGGc -3'
miRNA:   3'- uaaUGGUUGa-UGaGCgUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 80111 0.66 0.956054
Target:  5'- -gUACCGGCUugggcGC-CGCGGcAGCgGCGGc -3'
miRNA:   3'- uaAUGGUUGA-----UGaGCGUC-UCGgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.