Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 39344 | 0.66 | 0.966909 |
Target: 5'- --gGCCaAGCUGCgCGCGGcggcAGCCGCc- -3' miRNA: 3'- uaaUGG-UUGAUGaGCGUC----UCGGCGcu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 68758 | 0.66 | 0.966909 |
Target: 5'- --cGCCGggGC-GC-CGCGGAGCCGCc- -3' miRNA: 3'- uaaUGGU--UGaUGaGCGUCUCGGCGcu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 82383 | 0.66 | 0.966909 |
Target: 5'- --cGCCAGCgccgcccaGCcCGCGGGGCCGUc- -3' miRNA: 3'- uaaUGGUUGa-------UGaGCGUCUCGGCGcu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 118163 | 0.66 | 0.963527 |
Target: 5'- --gGCCGucgcgGCgggGCUUGCcgucuGGGCCGCGGg -3' miRNA: 3'- uaaUGGU-----UGa--UGAGCGu----CUCGGCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 118207 | 0.66 | 0.963527 |
Target: 5'- -cUGCCGcGCUGCgcggggCGCuGAcgGCCGCGGc -3' miRNA: 3'- uaAUGGU-UGAUGa-----GCGuCU--CGGCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 3434 | 0.66 | 0.963527 |
Target: 5'- --gGCCAGCguccagGCgggCGCGcGGGCCGCc- -3' miRNA: 3'- uaaUGGUUGa-----UGa--GCGU-CUCGGCGcu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 59097 | 0.66 | 0.963527 |
Target: 5'- --cGCCcucGC-GCUCGCAGGcGCgCGCGAg -3' miRNA: 3'- uaaUGGu--UGaUGAGCGUCU-CG-GCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 23892 | 0.66 | 0.963176 |
Target: 5'- --gGCCGGCUaggguggGCUCGCuGGGCUGgGc -3' miRNA: 3'- uaaUGGUUGA-------UGAGCGuCUCGGCgCu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 64961 | 0.66 | 0.959911 |
Target: 5'- --cACUGugUACUCGUccacGAGCCGCc- -3' miRNA: 3'- uaaUGGUugAUGAGCGu---CUCGGCGcu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 85706 | 0.66 | 0.959911 |
Target: 5'- --cACUuGCUGCcCGCAGAagauGCCGUGGc -3' miRNA: 3'- uaaUGGuUGAUGaGCGUCU----CGGCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 13040 | 0.66 | 0.959911 |
Target: 5'- --aGCCAGgg---CGCGGGGCCGCGc -3' miRNA: 3'- uaaUGGUUgaugaGCGUCUCGGCGCu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 92281 | 0.66 | 0.959911 |
Target: 5'- uGUUGCuCAGCUGCUgcaCGUAGGccaggaugagcGCCGCGc -3' miRNA: 3'- -UAAUG-GUUGAUGA---GCGUCU-----------CGGCGCu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 34353 | 0.66 | 0.959911 |
Target: 5'- --gGCCGACggggccggGCgccgCGCGGcGCCGCGc -3' miRNA: 3'- uaaUGGUUGa-------UGa---GCGUCuCGGCGCu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 218 | 0.66 | 0.959911 |
Target: 5'- --cGCCccuGgUGCUCGCGGGccCCGCGAg -3' miRNA: 3'- uaaUGGu--UgAUGAGCGUCUc-GGCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 30330 | 0.66 | 0.959911 |
Target: 5'- -gUGCCGGCgcgGCUgGC--GGCCGCGc -3' miRNA: 3'- uaAUGGUUGa--UGAgCGucUCGGCGCu -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 137901 | 0.66 | 0.959911 |
Target: 5'- --cGCCccuGgUGCUCGCGGGccCCGCGAg -3' miRNA: 3'- uaaUGGu--UgAUGAGCGUCUc-GGCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 135078 | 0.66 | 0.959911 |
Target: 5'- ---uCCGGCggcggGCUCGCGGcccGGCgGCGGa -3' miRNA: 3'- uaauGGUUGa----UGAGCGUC---UCGgCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 2730 | 0.66 | 0.959911 |
Target: 5'- --gGCCGACUugcGCUUGC---GCCGCGGc -3' miRNA: 3'- uaaUGGUUGA---UGAGCGucuCGGCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 80111 | 0.66 | 0.956054 |
Target: 5'- -gUACCGGCUugggcGC-CGCGGcAGCgGCGGc -3' miRNA: 3'- uaAUGGUUGA-----UGaGCGUC-UCGgCGCU- -5' |
|||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 74044 | 0.66 | 0.956054 |
Target: 5'- --gACCAGCgcGC-CGgGGGGCUGCGGc -3' miRNA: 3'- uaaUGGUUGa-UGaGCgUCUCGGCGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home