miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 34353 0.66 0.959911
Target:  5'- --gGCCGACggggccggGCgccgCGCGGcGCCGCGc -3'
miRNA:   3'- uaaUGGUUGa-------UGa---GCGUCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 74044 0.66 0.956054
Target:  5'- --gACCAGCgcGC-CGgGGGGCUGCGGc -3'
miRNA:   3'- uaaUGGUUGa-UGaGCgUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 135078 0.66 0.959911
Target:  5'- ---uCCGGCggcggGCUCGCGGcccGGCgGCGGa -3'
miRNA:   3'- uaauGGUUGa----UGAGCGUC---UCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 13040 0.66 0.959911
Target:  5'- --aGCCAGgg---CGCGGGGCCGCGc -3'
miRNA:   3'- uaaUGGUUgaugaGCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 2730 0.66 0.959911
Target:  5'- --gGCCGACUugcGCUUGC---GCCGCGGc -3'
miRNA:   3'- uaaUGGUUGA---UGAGCGucuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 137805 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 35312 0.67 0.943001
Target:  5'- --gGCCgGGCUGCUCGgGGAGgCCGgGc -3'
miRNA:   3'- uaaUGG-UUGAUGAGCgUCUC-GGCgCu -5'
23817 3' -52.8 NC_005261.1 + 23247 0.67 0.943001
Target:  5'- --gGCCGGcCUGCUCGggcgAGAGCUGCa- -3'
miRNA:   3'- uaaUGGUU-GAUGAGCg---UCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 133176 0.67 0.943001
Target:  5'- --cGCCGACaAC-CGCGGcGCCGuCGAg -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUCuCGGC-GCU- -5'
23817 3' -52.8 NC_005261.1 + 95646 0.67 0.947603
Target:  5'- --gGCgAGCgcgACgCGCGGcGCCGCGAc -3'
miRNA:   3'- uaaUGgUUGa--UGaGCGUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 52684 0.67 0.927653
Target:  5'- --gGCC--CUGCUCGCGGGcgcGCCGCu- -3'
miRNA:   3'- uaaUGGuuGAUGAGCGUCU---CGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 62686 0.67 0.922019
Target:  5'- --cGCCAGCUGCacgcgccggCGCAGcGUgGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGa--------GCGUCuCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29406 0.67 0.927653
Target:  5'- --gGCCGcgcGCUACgcggcggcCGCGGGGCCcGCGGc -3'
miRNA:   3'- uaaUGGU---UGAUGa-------GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 36338 0.67 0.927653
Target:  5'- --cGCCAGCUA---GCAGAgacuGCCGCGGa -3'
miRNA:   3'- uaaUGGUUGAUgagCGUCU----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 122 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 93901 0.67 0.933027
Target:  5'- --cGCCAgcgACUGCgggCGCGGcGCcCGCGGg -3'
miRNA:   3'- uaaUGGU---UGAUGa--GCGUCuCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 112559 0.67 0.933027
Target:  5'- --gACC-GCUAcCUCGCcuaccucgAGGGCUGCGAg -3'
miRNA:   3'- uaaUGGuUGAU-GAGCG--------UCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 3361 0.67 0.947603
Target:  5'- --cGCCGGC--CUU-CAGGGCCGCGAg -3'
miRNA:   3'- uaaUGGUUGauGAGcGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29823 0.67 0.947603
Target:  5'- --cGCCcGCgccgcGCUCGCcGAGCUGCGc -3'
miRNA:   3'- uaaUGGuUGa----UGAGCGuCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 31300 0.67 0.947603
Target:  5'- --gGCCcGCcGCcgCGCGGGGCcCGCGGg -3'
miRNA:   3'- uaaUGGuUGaUGa-GCGUCUCG-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.