miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 59182 0.7 0.84357
Target:  5'- --cGCCGACUGCUCGUAGGaCaCGaCGAc -3'
miRNA:   3'- uaaUGGUUGAUGAGCGUCUcG-GC-GCU- -5'
23817 3' -52.8 NC_005261.1 + 1669 0.7 0.84357
Target:  5'- --gGCCAugUcCUUGCGcccgucGAGCCGCGGc -3'
miRNA:   3'- uaaUGGUugAuGAGCGU------CUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 104823 0.7 0.835062
Target:  5'- ----gCAGCgGCgUCGCGGGGCCGCGc -3'
miRNA:   3'- uaaugGUUGaUG-AGCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 122323 0.7 0.817452
Target:  5'- --gGCCGGCggucagguggcGCUCGCAGAGCuCGCc- -3'
miRNA:   3'- uaaUGGUUGa----------UGAGCGUCUCG-GCGcu -5'
23817 3' -52.8 NC_005261.1 + 51674 0.7 0.817452
Target:  5'- --gGCCGcgaGCUGCaUCGCGGucGCCGCGc -3'
miRNA:   3'- uaaUGGU---UGAUG-AGCGUCu-CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 28609 0.69 0.882847
Target:  5'- --cGCCGA--GCUgGCGGAGCUGUGGc -3'
miRNA:   3'- uaaUGGUUgaUGAgCGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 72952 0.69 0.882118
Target:  5'- --cGCCGGCaccgGCUCGCgcccgccgccgcgGGGGuCCGCGAg -3'
miRNA:   3'- uaaUGGUUGa---UGAGCG-------------UCUC-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 44676 0.69 0.87545
Target:  5'- --cGCCuggaGACguacCUCGCGGAGCuCGCGGc -3'
miRNA:   3'- uaaUGG----UUGau--GAGCGUCUCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 102943 0.69 0.87545
Target:  5'- --cGCCGccGCUGCg-GCGGcGGCCGCGGg -3'
miRNA:   3'- uaaUGGU--UGAUGagCGUC-UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 87457 0.69 0.87545
Target:  5'- --cGCCGcgcCUGCUCGCAG-GCgCGCGu -3'
miRNA:   3'- uaaUGGUu--GAUGAGCGUCuCG-GCGCu -5'
23817 3' -52.8 NC_005261.1 + 55172 0.69 0.867818
Target:  5'- --cGCCGGCgGCUCGCGGGGCgGauCGGc -3'
miRNA:   3'- uaaUGGUUGaUGAGCGUCUCGgC--GCU- -5'
23817 3' -52.8 NC_005261.1 + 47568 0.69 0.867818
Target:  5'- -gUGCCcgUcGCgcauggCGCAGAGCCGCGc -3'
miRNA:   3'- uaAUGGuuGaUGa-----GCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 60108 0.69 0.867042
Target:  5'- --gGCCAGCgcGCcCGCGGgcacguaGGCCGCGAa -3'
miRNA:   3'- uaaUGGUUGa-UGaGCGUC-------UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 97168 0.69 0.859956
Target:  5'- --gGCCGGCUgGgUCGCGGgcgccggccgGGCCGCGGc -3'
miRNA:   3'- uaaUGGUUGA-UgAGCGUC----------UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 128127 0.69 0.855132
Target:  5'- --gGCCGAgUGCggagagaggcgacggUCGcCGGGGCCGCGGg -3'
miRNA:   3'- uaaUGGUUgAUG---------------AGC-GUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 123409 0.69 0.851871
Target:  5'- cUUGCCGGCcaggggcggGCUCGCcacGGGCCGCa- -3'
miRNA:   3'- uAAUGGUUGa--------UGAGCGu--CUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 67947 0.69 0.851871
Target:  5'- --cGCCGGCccGCUCGCGcGGCCGCc- -3'
miRNA:   3'- uaaUGGUUGa-UGAGCGUcUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 104769 0.69 0.851871
Target:  5'- --gGCCAGCacccGCUCGaaCAG-GCCGCGAu -3'
miRNA:   3'- uaaUGGUUGa---UGAGC--GUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 5137 0.69 0.849404
Target:  5'- --cGCCGGC-GCUCGCGcgccucggcccggcGGGCCGCGu -3'
miRNA:   3'- uaaUGGUUGaUGAGCGU--------------CUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 55035 0.68 0.890002
Target:  5'- --cGCCGGCcccgcgcaGCUgCGCGGGGCCgGCGAg -3'
miRNA:   3'- uaaUGGUUGa-------UGA-GCGUCUCGG-CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.