miRNA display CGI


Results 61 - 80 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 3361 0.67 0.947603
Target:  5'- --cGCCGGC--CUU-CAGGGCCGCGAg -3'
miRNA:   3'- uaaUGGUUGauGAGcGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29823 0.67 0.947603
Target:  5'- --cGCCcGCgccgcGCUCGCcGAGCUGCGc -3'
miRNA:   3'- uaaUGGuUGa----UGAGCGuCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 31300 0.67 0.947603
Target:  5'- --gGCCcGCcGCcgCGCGGGGCcCGCGGg -3'
miRNA:   3'- uaaUGGuUGaUGa-GCGUCUCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 95646 0.67 0.947603
Target:  5'- --gGCgAGCgcgACgCGCGGcGCCGCGAc -3'
miRNA:   3'- uaaUGgUUGa--UGaGCGUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 102290 0.67 0.933027
Target:  5'- --cGCCAGCgGC-CGCGGgucguAGCCGCGc -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUC-----UCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 49927 0.67 0.933027
Target:  5'- --cGCCucgagGCgccCGCGGAGCCGCGc -3'
miRNA:   3'- uaaUGGuuga-UGa--GCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 112559 0.67 0.933027
Target:  5'- --gACC-GCUAcCUCGCcuaccucgAGGGCUGCGAg -3'
miRNA:   3'- uaaUGGuUGAU-GAGCG--------UCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 62686 0.67 0.922019
Target:  5'- --cGCCAGCUGCacgcgccggCGCAGcGUgGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGa--------GCGUCuCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 69148 0.67 0.922019
Target:  5'- --cGCCAACUACcCGCAccgcgccGCCGCGc -3'
miRNA:   3'- uaaUGGUUGAUGaGCGUcu-----CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 95810 0.67 0.922019
Target:  5'- --cGCCGGCggggGCUCGCGGuccUCGCGGc -3'
miRNA:   3'- uaaUGGUUGa---UGAGCGUCuc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 22731 0.67 0.927653
Target:  5'- --gACCAGCgccaguCgggCGCGGGGCgGCGGc -3'
miRNA:   3'- uaaUGGUUGau----Ga--GCGUCUCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29406 0.67 0.927653
Target:  5'- --gGCCGcgcGCUACgcggcggcCGCGGGGCCcGCGGc -3'
miRNA:   3'- uaaUGGU---UGAUGa-------GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 36338 0.67 0.927653
Target:  5'- --cGCCAGCUA---GCAGAgacuGCCGCGGa -3'
miRNA:   3'- uaaUGGUUGAUgagCGUCU----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 122 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 52684 0.67 0.927653
Target:  5'- --gGCC--CUGCUCGCGGGcgcGCCGCu- -3'
miRNA:   3'- uaaUGGuuGAUGAGCGUCU---CGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 137805 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 4165 0.67 0.933027
Target:  5'- --cGCCAGCUGCagGUccGGGCCcGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGagCGu-CUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 93901 0.67 0.933027
Target:  5'- --cGCCAgcgACUGCgggCGCGGcGCcCGCGGg -3'
miRNA:   3'- uaaUGGU---UGAUGa--GCGUCuCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 68758 0.66 0.966909
Target:  5'- --cGCCGggGC-GC-CGCGGAGCCGCc- -3'
miRNA:   3'- uaaUGGU--UGaUGaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 104903 0.66 0.951953
Target:  5'- --cGCCcgGACgccCUC-CAGGGCCGCGGu -3'
miRNA:   3'- uaaUGG--UUGau-GAGcGUCUCGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.