miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 55035 0.68 0.890002
Target:  5'- --cGCCGGCcccgcgcaGCUgCGCGGGGCCgGCGAg -3'
miRNA:   3'- uaaUGGUUGa-------UGA-GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 67857 0.68 0.890002
Target:  5'- --gGCCgAGCUGCUCGCGGcaacucccgGGCgGCGc -3'
miRNA:   3'- uaaUGG-UUGAUGAGCGUC---------UCGgCGCu -5'
23817 3' -52.8 NC_005261.1 + 44302 0.68 0.896912
Target:  5'- --gGCCAgggccGCUGCcCGCGGGcGCCGCa- -3'
miRNA:   3'- uaaUGGU-----UGAUGaGCGUCU-CGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 37919 0.68 0.896912
Target:  5'- --cGCCAccGCUGCgcgaguacgagCGcCGGAGCCGCGu -3'
miRNA:   3'- uaaUGGU--UGAUGa----------GC-GUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 127816 0.68 0.896912
Target:  5'- --gGCgGGCcGCUCGCGcucgcGGCCGCGAg -3'
miRNA:   3'- uaaUGgUUGaUGAGCGUc----UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 2052 0.68 0.902916
Target:  5'- --gGCCAGCcGCagGCAGAgguacucgaccgcGCCGCGGa -3'
miRNA:   3'- uaaUGGUUGaUGagCGUCU-------------CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 127782 0.68 0.903571
Target:  5'- ---cCCGGCUGCUCGagcggcgggcCGGcGCCGCGGc -3'
miRNA:   3'- uaauGGUUGAUGAGC----------GUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 50105 0.68 0.903571
Target:  5'- -cUGCCcGCgccgCGCAGGGCCGCc- -3'
miRNA:   3'- uaAUGGuUGaugaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 29888 0.68 0.903571
Target:  5'- --cGCCAGCgcccggGCcCGCGGcAGCgCGCGAg -3'
miRNA:   3'- uaaUGGUUGa-----UGaGCGUC-UCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 95297 0.68 0.909977
Target:  5'- --gGCCAGCUGggCGCAGAcgGaCUGCGAc -3'
miRNA:   3'- uaaUGGUUGAUgaGCGUCU--C-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 107499 0.68 0.909977
Target:  5'- --cAgCAGCUGCgccaCGCAG-GCCGCGc -3'
miRNA:   3'- uaaUgGUUGAUGa---GCGUCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 121245 0.68 0.909977
Target:  5'- --gGCCAGCUccgACUCGgGGuccGCCGCa- -3'
miRNA:   3'- uaaUGGUUGA---UGAGCgUCu--CGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 106617 0.68 0.909977
Target:  5'- ---cCCAGacGC-CGCGGAGCCGCGc -3'
miRNA:   3'- uaauGGUUgaUGaGCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 95810 0.67 0.922019
Target:  5'- --cGCCGGCggggGCUCGCGGuccUCGCGGc -3'
miRNA:   3'- uaaUGGUUGa---UGAGCGUCuc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 69148 0.67 0.922019
Target:  5'- --cGCCAACUACcCGCAccgcgccGCCGCGc -3'
miRNA:   3'- uaaUGGUUGAUGaGCGUcu-----CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 62686 0.67 0.922019
Target:  5'- --cGCCAGCUGCacgcgccggCGCAGcGUgGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGa--------GCGUCuCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29406 0.67 0.927653
Target:  5'- --gGCCGcgcGCUACgcggcggcCGCGGGGCCcGCGGc -3'
miRNA:   3'- uaaUGGU---UGAUGa-------GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 36338 0.67 0.927653
Target:  5'- --cGCCAGCUA---GCAGAgacuGCCGCGGa -3'
miRNA:   3'- uaaUGGUUGAUgagCGUCU----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 122 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 52684 0.67 0.927653
Target:  5'- --gGCC--CUGCUCGCGGGcgcGCCGCu- -3'
miRNA:   3'- uaaUGGuuGAUGAGCGUCU---CGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.