miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 29406 0.67 0.927653
Target:  5'- --gGCCGcgcGCUACgcggcggcCGCGGGGCCcGCGGc -3'
miRNA:   3'- uaaUGGU---UGAUGa-------GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 22731 0.67 0.927653
Target:  5'- --gACCAGCgccaguCgggCGCGGGGCgGCGGc -3'
miRNA:   3'- uaaUGGUUGau----Ga--GCGUCUCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 102290 0.67 0.933027
Target:  5'- --cGCCAGCgGC-CGCGGgucguAGCCGCGc -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUC-----UCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 49927 0.67 0.933027
Target:  5'- --cGCCucgagGCgccCGCGGAGCCGCGc -3'
miRNA:   3'- uaaUGGuuga-UGa--GCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 112559 0.67 0.933027
Target:  5'- --gACC-GCUAcCUCGCcuaccucgAGGGCUGCGAg -3'
miRNA:   3'- uaaUGGuUGAU-GAGCG--------UCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 93901 0.67 0.933027
Target:  5'- --cGCCAgcgACUGCgggCGCGGcGCcCGCGGg -3'
miRNA:   3'- uaaUGGU---UGAUGa--GCGUCuCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 4165 0.67 0.933027
Target:  5'- --cGCCAGCUGCagGUccGGGCCcGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGagCGu-CUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 31663 0.67 0.938143
Target:  5'- -gUACCu-CUGCcUGCGGcuGGCCGCGGc -3'
miRNA:   3'- uaAUGGuuGAUGaGCGUC--UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 133176 0.67 0.943001
Target:  5'- --cGCCGACaAC-CGCGGcGCCGuCGAg -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUCuCGGC-GCU- -5'
23817 3' -52.8 NC_005261.1 + 97246 0.67 0.943001
Target:  5'- --gGCCGGCUgGgUCGCGGGGUCGgGu -3'
miRNA:   3'- uaaUGGUUGA-UgAGCGUCUCGGCgCu -5'
23817 3' -52.8 NC_005261.1 + 103412 0.67 0.943001
Target:  5'- ---uCCAGCUcCgCGCGG-GCCGCGGc -3'
miRNA:   3'- uaauGGUUGAuGaGCGUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 88439 0.67 0.943001
Target:  5'- --gGCCAccGCUGCUgGCcGcGCCGCGu -3'
miRNA:   3'- uaaUGGU--UGAUGAgCGuCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 35312 0.67 0.943001
Target:  5'- --gGCCgGGCUGCUCGgGGAGgCCGgGc -3'
miRNA:   3'- uaaUGG-UUGAUGAGCgUCUC-GGCgCu -5'
23817 3' -52.8 NC_005261.1 + 23247 0.67 0.943001
Target:  5'- --gGCCGGcCUGCUCGggcgAGAGCUGCa- -3'
miRNA:   3'- uaaUGGUU-GAUGAGCg---UCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 95646 0.67 0.947603
Target:  5'- --gGCgAGCgcgACgCGCGGcGCCGCGAc -3'
miRNA:   3'- uaaUGgUUGa--UGaGCGUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 31300 0.67 0.947603
Target:  5'- --gGCCcGCcGCcgCGCGGGGCcCGCGGg -3'
miRNA:   3'- uaaUGGuUGaUGa-GCGUCUCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29823 0.67 0.947603
Target:  5'- --cGCCcGCgccgcGCUCGCcGAGCUGCGc -3'
miRNA:   3'- uaaUGGuUGa----UGAGCGuCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 3361 0.67 0.947603
Target:  5'- --cGCCGGC--CUU-CAGGGCCGCGAg -3'
miRNA:   3'- uaaUGGUUGauGAGcGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 104903 0.66 0.951953
Target:  5'- --cGCCcgGACgccCUC-CAGGGCCGCGGu -3'
miRNA:   3'- uaaUGG--UUGau-GAGcGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 48648 0.66 0.951953
Target:  5'- --cGCCGGCccccGCcCGgAGAGCCGCGc -3'
miRNA:   3'- uaaUGGUUGa---UGaGCgUCUCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.