Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 104823 | 0.7 | 0.835062 |
Target: 5'- ----gCAGCgGCgUCGCGGGGCCGCGc -3' miRNA: 3'- uaaugGUUGaUG-AGCGUCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 122323 | 0.7 | 0.817452 |
Target: 5'- --gGCCGGCggucagguggcGCUCGCAGAGCuCGCc- -3' miRNA: 3'- uaaUGGUUGa----------UGAGCGUCUCG-GCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 51674 | 0.7 | 0.817452 |
Target: 5'- --gGCCGcgaGCUGCaUCGCGGucGCCGCGc -3' miRNA: 3'- uaaUGGU---UGAUG-AGCGUCu-CGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 132088 | 0.71 | 0.799113 |
Target: 5'- --cGCC-GCUGC-CGCGGAgggcgGCCGCGAc -3' miRNA: 3'- uaaUGGuUGAUGaGCGUCU-----CGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 39003 | 0.71 | 0.789693 |
Target: 5'- -gUGCCAGCgcgcccACgCGCAGAGCgucCGCGAg -3' miRNA: 3'- uaAUGGUUGa-----UGaGCGUCUCG---GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 57385 | 0.71 | 0.780119 |
Target: 5'- --cGCCAGCaGCUCGgGGAGCgCGCc- -3' miRNA: 3'- uaaUGGUUGaUGAGCgUCUCG-GCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 76739 | 0.71 | 0.76055 |
Target: 5'- --gGCCGACgUGCUCGCGGAcGUgGCGc -3' miRNA: 3'- uaaUGGUUG-AUGAGCGUCU-CGgCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 121949 | 0.71 | 0.759558 |
Target: 5'- --cGCCAGCUugaaccaGCUCGCcGuGCCGCGc -3' miRNA: 3'- uaaUGGUUGA-------UGAGCGuCuCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 33758 | 0.71 | 0.750576 |
Target: 5'- --gGCCgGGCccGCUCGCGGGGCCcGCGGc -3' miRNA: 3'- uaaUGG-UUGa-UGAGCGUCUCGG-CGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 3800 | 0.72 | 0.740488 |
Target: 5'- --cGCCAGCUcgcgcagccGCUCGCGcgcuGCCGCGGg -3' miRNA: 3'- uaaUGGUUGA---------UGAGCGUcu--CGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 58337 | 0.72 | 0.730298 |
Target: 5'- --cACCGc---CUCGCGGAGCCGCGc -3' miRNA: 3'- uaaUGGUugauGAGCGUCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 50407 | 0.72 | 0.699218 |
Target: 5'- --gGCCGGCaGCcccgcgUCGCGGAGCCGCu- -3' miRNA: 3'- uaaUGGUUGaUG------AGCGUCUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 100456 | 0.72 | 0.699218 |
Target: 5'- --cGCCAGCUugUCGCcc-GCCGCGc -3' miRNA: 3'- uaaUGGUUGAugAGCGucuCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 103824 | 0.73 | 0.677118 |
Target: 5'- --cGCCAGCaGCUCGCGGAggagcucgcccuuGCgCGCGAg -3' miRNA: 3'- uaaUGGUUGaUGAGCGUCU-------------CG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 121482 | 0.73 | 0.667587 |
Target: 5'- -gUACCGGCUGC-CGCcacGGGGCgGCGGg -3' miRNA: 3'- uaAUGGUUGAUGaGCG---UCUCGgCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 129724 | 0.73 | 0.667587 |
Target: 5'- --cGCCGGCUGCagCgGCAGGGCgGCGGg -3' miRNA: 3'- uaaUGGUUGAUGa-G-CGUCUCGgCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 133681 | 0.73 | 0.655904 |
Target: 5'- --cGCCAACgGCUCGCuccgcugGGAGCUGCGc -3' miRNA: 3'- uaaUGGUUGaUGAGCG-------UCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 33480 | 0.74 | 0.635675 |
Target: 5'- --aGCCgGGCccGCUCGCGGGGCCcGCGAg -3' miRNA: 3'- uaaUGG-UUGa-UGAGCGUCUCGG-CGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 14439 | 0.74 | 0.603733 |
Target: 5'- --aACuCGGCUcGCUCGCGGGGCgCGCGGc -3' miRNA: 3'- uaaUG-GUUGA-UGAGCGUCUCG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 57284 | 0.75 | 0.582539 |
Target: 5'- --cGgCAGCUGCUCGCgAGcAGCCGCGc -3' miRNA: 3'- uaaUgGUUGAUGAGCG-UC-UCGGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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