miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 122 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 218 0.66 0.959911
Target:  5'- --cGCCccuGgUGCUCGCGGGccCCGCGAg -3'
miRNA:   3'- uaaUGGu--UgAUGAGCGUCUc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 1669 0.7 0.84357
Target:  5'- --gGCCAugUcCUUGCGcccgucGAGCCGCGGc -3'
miRNA:   3'- uaaUGGUugAuGAGCGU------CUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 2052 0.68 0.902916
Target:  5'- --gGCCAGCcGCagGCAGAgguacucgaccgcGCCGCGGa -3'
miRNA:   3'- uaaUGGUUGaUGagCGUCU-------------CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 2730 0.66 0.959911
Target:  5'- --gGCCGACUugcGCUUGC---GCCGCGGc -3'
miRNA:   3'- uaaUGGUUGA---UGAGCGucuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 3361 0.67 0.947603
Target:  5'- --cGCCGGC--CUU-CAGGGCCGCGAg -3'
miRNA:   3'- uaaUGGUUGauGAGcGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 3434 0.66 0.963527
Target:  5'- --gGCCAGCguccagGCgggCGCGcGGGCCGCc- -3'
miRNA:   3'- uaaUGGUUGa-----UGa--GCGU-CUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 3800 0.72 0.740488
Target:  5'- --cGCCAGCUcgcgcagccGCUCGCGcgcuGCCGCGGg -3'
miRNA:   3'- uaaUGGUUGA---------UGAGCGUcu--CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 4165 0.67 0.933027
Target:  5'- --cGCCAGCUGCagGUccGGGCCcGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGagCGu-CUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 5137 0.69 0.849404
Target:  5'- --cGCCGGC-GCUCGCGcgccucggcccggcGGGCCGCGu -3'
miRNA:   3'- uaaUGGUUGaUGAGCGU--------------CUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 13040 0.66 0.959911
Target:  5'- --aGCCAGgg---CGCGGGGCCGCGc -3'
miRNA:   3'- uaaUGGUUgaugaGCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 14439 0.74 0.603733
Target:  5'- --aACuCGGCUcGCUCGCGGGGCgCGCGGc -3'
miRNA:   3'- uaaUG-GUUGA-UGAGCGUCUCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 15232 0.75 0.530354
Target:  5'- --aGCCGGCguugaggccccGCUCGCAGugGGCCGCGAu -3'
miRNA:   3'- uaaUGGUUGa----------UGAGCGUC--UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 22731 0.67 0.927653
Target:  5'- --gACCAGCgccaguCgggCGCGGGGCgGCGGc -3'
miRNA:   3'- uaaUGGUUGau----Ga--GCGUCUCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 23247 0.67 0.943001
Target:  5'- --gGCCGGcCUGCUCGggcgAGAGCUGCa- -3'
miRNA:   3'- uaaUGGUU-GAUGAGCg---UCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 23892 0.66 0.963176
Target:  5'- --gGCCGGCUaggguggGCUCGCuGGGCUGgGc -3'
miRNA:   3'- uaaUGGUUGA-------UGAGCGuCUCGGCgCu -5'
23817 3' -52.8 NC_005261.1 + 28609 0.69 0.882847
Target:  5'- --cGCCGA--GCUgGCGGAGCUGUGGc -3'
miRNA:   3'- uaaUGGUUgaUGAgCGUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 29406 0.67 0.927653
Target:  5'- --gGCCGcgcGCUACgcggcggcCGCGGGGCCcGCGGc -3'
miRNA:   3'- uaaUGGU---UGAUGa-------GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 29823 0.67 0.947603
Target:  5'- --cGCCcGCgccgcGCUCGCcGAGCUGCGc -3'
miRNA:   3'- uaaUGGuUGa----UGAGCGuCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 29888 0.68 0.903571
Target:  5'- --cGCCAGCgcccggGCcCGCGGcAGCgCGCGAg -3'
miRNA:   3'- uaaUGGUUGa-----UGaGCGUC-UCG-GCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.