miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 30330 0.66 0.959911
Target:  5'- -gUGCCGGCgcgGCUgGC--GGCCGCGc -3'
miRNA:   3'- uaAUGGUUGa--UGAgCGucUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 31300 0.67 0.947603
Target:  5'- --gGCCcGCcGCcgCGCGGGGCcCGCGGg -3'
miRNA:   3'- uaaUGGuUGaUGa-GCGUCUCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 31663 0.67 0.938143
Target:  5'- -gUACCu-CUGCcUGCGGcuGGCCGCGGc -3'
miRNA:   3'- uaAUGGuuGAUGaGCGUC--UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 33480 0.74 0.635675
Target:  5'- --aGCCgGGCccGCUCGCGGGGCCcGCGAg -3'
miRNA:   3'- uaaUGG-UUGa-UGAGCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 33758 0.71 0.750576
Target:  5'- --gGCCgGGCccGCUCGCGGGGCCcGCGGc -3'
miRNA:   3'- uaaUGG-UUGa-UGAGCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 34353 0.66 0.959911
Target:  5'- --gGCCGACggggccggGCgccgCGCGGcGCCGCGc -3'
miRNA:   3'- uaaUGGUUGa-------UGa---GCGUCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 35312 0.67 0.943001
Target:  5'- --gGCCgGGCUGCUCGgGGAGgCCGgGc -3'
miRNA:   3'- uaaUGG-UUGAUGAGCgUCUC-GGCgCu -5'
23817 3' -52.8 NC_005261.1 + 36338 0.67 0.927653
Target:  5'- --cGCCAGCUA---GCAGAgacuGCCGCGGa -3'
miRNA:   3'- uaaUGGUUGAUgagCGUCU----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 37919 0.68 0.896912
Target:  5'- --cGCCAccGCUGCgcgaguacgagCGcCGGAGCCGCGu -3'
miRNA:   3'- uaaUGGU--UGAUGa----------GC-GUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 39003 0.71 0.789693
Target:  5'- -gUGCCAGCgcgcccACgCGCAGAGCgucCGCGAg -3'
miRNA:   3'- uaAUGGUUGa-----UGaGCGUCUCG---GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 39344 0.66 0.966909
Target:  5'- --gGCCaAGCUGCgCGCGGcggcAGCCGCc- -3'
miRNA:   3'- uaaUGG-UUGAUGaGCGUC----UCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 44302 0.68 0.896912
Target:  5'- --gGCCAgggccGCUGCcCGCGGGcGCCGCa- -3'
miRNA:   3'- uaaUGGU-----UGAUGaGCGUCU-CGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 44676 0.69 0.87545
Target:  5'- --cGCCuggaGACguacCUCGCGGAGCuCGCGGc -3'
miRNA:   3'- uaaUGG----UUGau--GAGCGUCUCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 47568 0.69 0.867818
Target:  5'- -gUGCCcgUcGCgcauggCGCAGAGCCGCGc -3'
miRNA:   3'- uaAUGGuuGaUGa-----GCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 48648 0.66 0.951953
Target:  5'- --cGCCGGCccccGCcCGgAGAGCCGCGc -3'
miRNA:   3'- uaaUGGUUGa---UGaGCgUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 49927 0.67 0.933027
Target:  5'- --cGCCucgagGCgccCGCGGAGCCGCGc -3'
miRNA:   3'- uaaUGGuuga-UGa--GCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 50105 0.68 0.903571
Target:  5'- -cUGCCcGCgccgCGCAGGGCCGCc- -3'
miRNA:   3'- uaAUGGuUGaugaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 50407 0.72 0.699218
Target:  5'- --gGCCGGCaGCcccgcgUCGCGGAGCCGCu- -3'
miRNA:   3'- uaaUGGUUGaUG------AGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 51674 0.7 0.817452
Target:  5'- --gGCCGcgaGCUGCaUCGCGGucGCCGCGc -3'
miRNA:   3'- uaaUGGU---UGAUG-AGCGUCu-CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 52684 0.67 0.927653
Target:  5'- --gGCC--CUGCUCGCGGGcgcGCCGCu- -3'
miRNA:   3'- uaaUGGuuGAUGAGCGUCU---CGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.