miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 55035 0.68 0.890002
Target:  5'- --cGCCGGCcccgcgcaGCUgCGCGGGGCCgGCGAg -3'
miRNA:   3'- uaaUGGUUGa-------UGA-GCGUCUCGG-CGCU- -5'
23817 3' -52.8 NC_005261.1 + 55172 0.69 0.867818
Target:  5'- --cGCCGGCgGCUCGCGGGGCgGauCGGc -3'
miRNA:   3'- uaaUGGUUGaUGAGCGUCUCGgC--GCU- -5'
23817 3' -52.8 NC_005261.1 + 57284 0.75 0.582539
Target:  5'- --cGgCAGCUGCUCGCgAGcAGCCGCGc -3'
miRNA:   3'- uaaUgGUUGAUGAGCG-UC-UCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 57385 0.71 0.780119
Target:  5'- --cGCCAGCaGCUCGgGGAGCgCGCc- -3'
miRNA:   3'- uaaUGGUUGaUGAGCgUCUCG-GCGcu -5'
23817 3' -52.8 NC_005261.1 + 58337 0.72 0.730298
Target:  5'- --cACCGc---CUCGCGGAGCCGCGc -3'
miRNA:   3'- uaaUGGUugauGAGCGUCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 59097 0.66 0.963527
Target:  5'- --cGCCcucGC-GCUCGCAGGcGCgCGCGAg -3'
miRNA:   3'- uaaUGGu--UGaUGAGCGUCU-CG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 59182 0.7 0.84357
Target:  5'- --cGCCGACUGCUCGUAGGaCaCGaCGAc -3'
miRNA:   3'- uaaUGGUUGAUGAGCGUCUcG-GC-GCU- -5'
23817 3' -52.8 NC_005261.1 + 60108 0.69 0.867042
Target:  5'- --gGCCAGCgcGCcCGCGGgcacguaGGCCGCGAa -3'
miRNA:   3'- uaaUGGUUGa-UGaGCGUC-------UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 62686 0.67 0.922019
Target:  5'- --cGCCAGCUGCacgcgccggCGCAGcGUgGCGAg -3'
miRNA:   3'- uaaUGGUUGAUGa--------GCGUCuCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 64961 0.66 0.959911
Target:  5'- --cACUGugUACUCGUccacGAGCCGCc- -3'
miRNA:   3'- uaaUGGUugAUGAGCGu---CUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 67857 0.68 0.890002
Target:  5'- --gGCCgAGCUGCUCGCGGcaacucccgGGCgGCGc -3'
miRNA:   3'- uaaUGG-UUGAUGAGCGUC---------UCGgCGCu -5'
23817 3' -52.8 NC_005261.1 + 67947 0.69 0.851871
Target:  5'- --cGCCGGCccGCUCGCGcGGCCGCc- -3'
miRNA:   3'- uaaUGGUUGa-UGAGCGUcUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 68156 0.76 0.52011
Target:  5'- --gGCCGGCUACacgcgCGCGGAGCuCGCGc -3'
miRNA:   3'- uaaUGGUUGAUGa----GCGUCUCG-GCGCu -5'
23817 3' -52.8 NC_005261.1 + 68758 0.66 0.966909
Target:  5'- --cGCCGggGC-GC-CGCGGAGCCGCc- -3'
miRNA:   3'- uaaUGGU--UGaUGaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 69148 0.67 0.922019
Target:  5'- --cGCCAACUACcCGCAccgcgccGCCGCGc -3'
miRNA:   3'- uaaUGGUUGAUGaGCGUcu-----CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 72952 0.69 0.882118
Target:  5'- --cGCCGGCaccgGCUCGCgcccgccgccgcgGGGGuCCGCGAg -3'
miRNA:   3'- uaaUGGUUGa---UGAGCG-------------UCUC-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 74044 0.66 0.956054
Target:  5'- --gACCAGCgcGC-CGgGGGGCUGCGGc -3'
miRNA:   3'- uaaUGGUUGa-UGaGCgUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 76739 0.71 0.76055
Target:  5'- --gGCCGACgUGCUCGCGGAcGUgGCGc -3'
miRNA:   3'- uaaUGGUUG-AUGAGCGUCU-CGgCGCu -5'
23817 3' -52.8 NC_005261.1 + 80111 0.66 0.956054
Target:  5'- -gUACCGGCUugggcGC-CGCGGcAGCgGCGGc -3'
miRNA:   3'- uaAUGGUUGA-----UGaGCGUC-UCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 81529 0.66 0.951953
Target:  5'- --cGCCAggcGCUGCaggaccgCGUAGAGCaGCGAg -3'
miRNA:   3'- uaaUGGU---UGAUGa------GCGUCUCGgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.