miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 82383 0.66 0.966909
Target:  5'- --cGCCAGCgccgcccaGCcCGCGGGGCCGUc- -3'
miRNA:   3'- uaaUGGUUGa-------UGaGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 85706 0.66 0.959911
Target:  5'- --cACUuGCUGCcCGCAGAagauGCCGUGGc -3'
miRNA:   3'- uaaUGGuUGAUGaGCGUCU----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 87457 0.69 0.87545
Target:  5'- --cGCCGcgcCUGCUCGCAG-GCgCGCGu -3'
miRNA:   3'- uaaUGGUu--GAUGAGCGUCuCG-GCGCu -5'
23817 3' -52.8 NC_005261.1 + 87678 0.66 0.951953
Target:  5'- --cGCCAGCggugAgUCGCAGcuCCGCGc -3'
miRNA:   3'- uaaUGGUUGa---UgAGCGUCucGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 88439 0.67 0.943001
Target:  5'- --gGCCAccGCUGCUgGCcGcGCCGCGu -3'
miRNA:   3'- uaaUGGU--UGAUGAgCGuCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 92281 0.66 0.959911
Target:  5'- uGUUGCuCAGCUGCUgcaCGUAGGccaggaugagcGCCGCGc -3'
miRNA:   3'- -UAAUG-GUUGAUGA---GCGUCU-----------CGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 93901 0.67 0.933027
Target:  5'- --cGCCAgcgACUGCgggCGCGGcGCcCGCGGg -3'
miRNA:   3'- uaaUGGU---UGAUGa--GCGUCuCG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 95297 0.68 0.909977
Target:  5'- --gGCCAGCUGggCGCAGAcgGaCUGCGAc -3'
miRNA:   3'- uaaUGGUUGAUgaGCGUCU--C-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 95646 0.67 0.947603
Target:  5'- --gGCgAGCgcgACgCGCGGcGCCGCGAc -3'
miRNA:   3'- uaaUGgUUGa--UGaGCGUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 95810 0.67 0.922019
Target:  5'- --cGCCGGCggggGCUCGCGGuccUCGCGGc -3'
miRNA:   3'- uaaUGGUUGa---UGAGCGUCuc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 97168 0.69 0.859956
Target:  5'- --gGCCGGCUgGgUCGCGGgcgccggccgGGCCGCGGc -3'
miRNA:   3'- uaaUGGUUGA-UgAGCGUC----------UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 97246 0.67 0.943001
Target:  5'- --gGCCGGCUgGgUCGCGGGGUCGgGu -3'
miRNA:   3'- uaaUGGUUGA-UgAGCGUCUCGGCgCu -5'
23817 3' -52.8 NC_005261.1 + 100456 0.72 0.699218
Target:  5'- --cGCCAGCUugUCGCcc-GCCGCGc -3'
miRNA:   3'- uaaUGGUUGAugAGCGucuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 102290 0.67 0.933027
Target:  5'- --cGCCAGCgGC-CGCGGgucguAGCCGCGc -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUC-----UCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 102943 0.69 0.87545
Target:  5'- --cGCCGccGCUGCg-GCGGcGGCCGCGGg -3'
miRNA:   3'- uaaUGGU--UGAUGagCGUC-UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 103412 0.67 0.943001
Target:  5'- ---uCCAGCUcCgCGCGG-GCCGCGGc -3'
miRNA:   3'- uaauGGUUGAuGaGCGUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 103824 0.73 0.677118
Target:  5'- --cGCCAGCaGCUCGCGGAggagcucgcccuuGCgCGCGAg -3'
miRNA:   3'- uaaUGGUUGaUGAGCGUCU-------------CG-GCGCU- -5'
23817 3' -52.8 NC_005261.1 + 104036 0.68 0.890002
Target:  5'- --cGCCGcgcaggaaguACUGC-CGCAGcgccucGGCCGCGAg -3'
miRNA:   3'- uaaUGGU----------UGAUGaGCGUC------UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 104769 0.69 0.851871
Target:  5'- --gGCCAGCacccGCUCGaaCAG-GCCGCGAu -3'
miRNA:   3'- uaaUGGUUGa---UGAGC--GUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 104823 0.7 0.835062
Target:  5'- ----gCAGCgGCgUCGCGGGGCCGCGc -3'
miRNA:   3'- uaaugGUUGaUG-AGCGUCUCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.