miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 3' -52.8 NC_005261.1 + 137901 0.66 0.959911
Target:  5'- --cGCCccuGgUGCUCGCGGGccCCGCGAg -3'
miRNA:   3'- uaaUGGu--UgAUGAGCGUCUc-GGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 137805 0.67 0.927653
Target:  5'- --cGCCGGCgccgccccuggUGCUCGCGGGGCUggcagggcugGCGGa -3'
miRNA:   3'- uaaUGGUUG-----------AUGAGCGUCUCGG----------CGCU- -5'
23817 3' -52.8 NC_005261.1 + 135078 0.66 0.959911
Target:  5'- ---uCCGGCggcggGCUCGCGGcccGGCgGCGGa -3'
miRNA:   3'- uaauGGUUGa----UGAGCGUC---UCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 134431 0.76 0.52011
Target:  5'- ---uCCAcGCUGCUCGCGGGGCUGCu- -3'
miRNA:   3'- uaauGGU-UGAUGAGCGUCUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 133681 0.73 0.655904
Target:  5'- --cGCCAACgGCUCGCuccgcugGGAGCUGCGc -3'
miRNA:   3'- uaaUGGUUGaUGAGCG-------UCUCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 133176 0.67 0.943001
Target:  5'- --cGCCGACaAC-CGCGGcGCCGuCGAg -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUCuCGGC-GCU- -5'
23817 3' -52.8 NC_005261.1 + 132088 0.71 0.799113
Target:  5'- --cGCC-GCUGC-CGCGGAgggcgGCCGCGAc -3'
miRNA:   3'- uaaUGGuUGAUGaGCGUCU-----CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 129724 0.73 0.667587
Target:  5'- --cGCCGGCUGCagCgGCAGGGCgGCGGg -3'
miRNA:   3'- uaaUGGUUGAUGa-G-CGUCUCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 128127 0.69 0.855132
Target:  5'- --gGCCGAgUGCggagagaggcgacggUCGcCGGGGCCGCGGg -3'
miRNA:   3'- uaaUGGUUgAUG---------------AGC-GUCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 127816 0.68 0.896912
Target:  5'- --gGCgGGCcGCUCGCGcucgcGGCCGCGAg -3'
miRNA:   3'- uaaUGgUUGaUGAGCGUc----UCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 127782 0.68 0.903571
Target:  5'- ---cCCGGCUGCUCGagcggcgggcCGGcGCCGCGGc -3'
miRNA:   3'- uaauGGUUGAUGAGC----------GUCuCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 123409 0.69 0.851871
Target:  5'- cUUGCCGGCcaggggcggGCUCGCcacGGGCCGCa- -3'
miRNA:   3'- uAAUGGUUGa--------UGAGCGu--CUCGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 122323 0.7 0.817452
Target:  5'- --gGCCGGCggucagguggcGCUCGCAGAGCuCGCc- -3'
miRNA:   3'- uaaUGGUUGa----------UGAGCGUCUCG-GCGcu -5'
23817 3' -52.8 NC_005261.1 + 121949 0.71 0.759558
Target:  5'- --cGCCAGCUugaaccaGCUCGCcGuGCCGCGc -3'
miRNA:   3'- uaaUGGUUGA-------UGAGCGuCuCGGCGCu -5'
23817 3' -52.8 NC_005261.1 + 121482 0.73 0.667587
Target:  5'- -gUACCGGCUGC-CGCcacGGGGCgGCGGg -3'
miRNA:   3'- uaAUGGUUGAUGaGCG---UCUCGgCGCU- -5'
23817 3' -52.8 NC_005261.1 + 121245 0.68 0.909977
Target:  5'- --gGCCAGCUccgACUCGgGGuccGCCGCa- -3'
miRNA:   3'- uaaUGGUUGA---UGAGCgUCu--CGGCGcu -5'
23817 3' -52.8 NC_005261.1 + 118207 0.66 0.963527
Target:  5'- -cUGCCGcGCUGCgcggggCGCuGAcgGCCGCGGc -3'
miRNA:   3'- uaAUGGU-UGAUGa-----GCGuCU--CGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 118163 0.66 0.963527
Target:  5'- --gGCCGucgcgGCgggGCUUGCcgucuGGGCCGCGGg -3'
miRNA:   3'- uaaUGGU-----UGa--UGAGCGu----CUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 112559 0.67 0.933027
Target:  5'- --gACC-GCUAcCUCGCcuaccucgAGGGCUGCGAg -3'
miRNA:   3'- uaaUGGuUGAU-GAGCG--------UCUCGGCGCU- -5'
23817 3' -52.8 NC_005261.1 + 112174 0.66 0.951953
Target:  5'- --cGCCGGCcGCgCGCGGGGCuCGCu- -3'
miRNA:   3'- uaaUGGUUGaUGaGCGUCUCG-GCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.