Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 87457 | 0.69 | 0.87545 |
Target: 5'- --cGCCGcgcCUGCUCGCAG-GCgCGCGu -3' miRNA: 3'- uaaUGGUu--GAUGAGCGUCuCG-GCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 85706 | 0.66 | 0.959911 |
Target: 5'- --cACUuGCUGCcCGCAGAagauGCCGUGGc -3' miRNA: 3'- uaaUGGuUGAUGaGCGUCU----CGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 82383 | 0.66 | 0.966909 |
Target: 5'- --cGCCAGCgccgcccaGCcCGCGGGGCCGUc- -3' miRNA: 3'- uaaUGGUUGa-------UGaGCGUCUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 81529 | 0.66 | 0.951953 |
Target: 5'- --cGCCAggcGCUGCaggaccgCGUAGAGCaGCGAg -3' miRNA: 3'- uaaUGGU---UGAUGa------GCGUCUCGgCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 80111 | 0.66 | 0.956054 |
Target: 5'- -gUACCGGCUugggcGC-CGCGGcAGCgGCGGc -3' miRNA: 3'- uaAUGGUUGA-----UGaGCGUC-UCGgCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 76739 | 0.71 | 0.76055 |
Target: 5'- --gGCCGACgUGCUCGCGGAcGUgGCGc -3' miRNA: 3'- uaaUGGUUG-AUGAGCGUCU-CGgCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 74044 | 0.66 | 0.956054 |
Target: 5'- --gACCAGCgcGC-CGgGGGGCUGCGGc -3' miRNA: 3'- uaaUGGUUGa-UGaGCgUCUCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 72952 | 0.69 | 0.882118 |
Target: 5'- --cGCCGGCaccgGCUCGCgcccgccgccgcgGGGGuCCGCGAg -3' miRNA: 3'- uaaUGGUUGa---UGAGCG-------------UCUC-GGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 69148 | 0.67 | 0.922019 |
Target: 5'- --cGCCAACUACcCGCAccgcgccGCCGCGc -3' miRNA: 3'- uaaUGGUUGAUGaGCGUcu-----CGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 68758 | 0.66 | 0.966909 |
Target: 5'- --cGCCGggGC-GC-CGCGGAGCCGCc- -3' miRNA: 3'- uaaUGGU--UGaUGaGCGUCUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 68156 | 0.76 | 0.52011 |
Target: 5'- --gGCCGGCUACacgcgCGCGGAGCuCGCGc -3' miRNA: 3'- uaaUGGUUGAUGa----GCGUCUCG-GCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 67947 | 0.69 | 0.851871 |
Target: 5'- --cGCCGGCccGCUCGCGcGGCCGCc- -3' miRNA: 3'- uaaUGGUUGa-UGAGCGUcUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 67857 | 0.68 | 0.890002 |
Target: 5'- --gGCCgAGCUGCUCGCGGcaacucccgGGCgGCGc -3' miRNA: 3'- uaaUGG-UUGAUGAGCGUC---------UCGgCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 64961 | 0.66 | 0.959911 |
Target: 5'- --cACUGugUACUCGUccacGAGCCGCc- -3' miRNA: 3'- uaaUGGUugAUGAGCGu---CUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 62686 | 0.67 | 0.922019 |
Target: 5'- --cGCCAGCUGCacgcgccggCGCAGcGUgGCGAg -3' miRNA: 3'- uaaUGGUUGAUGa--------GCGUCuCGgCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 60108 | 0.69 | 0.867042 |
Target: 5'- --gGCCAGCgcGCcCGCGGgcacguaGGCCGCGAa -3' miRNA: 3'- uaaUGGUUGa-UGaGCGUC-------UCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 59182 | 0.7 | 0.84357 |
Target: 5'- --cGCCGACUGCUCGUAGGaCaCGaCGAc -3' miRNA: 3'- uaaUGGUUGAUGAGCGUCUcG-GC-GCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 59097 | 0.66 | 0.963527 |
Target: 5'- --cGCCcucGC-GCUCGCAGGcGCgCGCGAg -3' miRNA: 3'- uaaUGGu--UGaUGAGCGUCU-CG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 58337 | 0.72 | 0.730298 |
Target: 5'- --cACCGc---CUCGCGGAGCCGCGc -3' miRNA: 3'- uaaUGGUugauGAGCGUCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 57385 | 0.71 | 0.780119 |
Target: 5'- --cGCCAGCaGCUCGgGGAGCgCGCc- -3' miRNA: 3'- uaaUGGUUGaUGAGCgUCUCG-GCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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