Results 81 - 100 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 31663 | 0.67 | 0.938143 |
Target: 5'- -gUACCu-CUGCcUGCGGcuGGCCGCGGc -3' miRNA: 3'- uaAUGGuuGAUGaGCGUC--UCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 31300 | 0.67 | 0.947603 |
Target: 5'- --gGCCcGCcGCcgCGCGGGGCcCGCGGg -3' miRNA: 3'- uaaUGGuUGaUGa-GCGUCUCG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 30330 | 0.66 | 0.959911 |
Target: 5'- -gUGCCGGCgcgGCUgGC--GGCCGCGc -3' miRNA: 3'- uaAUGGUUGa--UGAgCGucUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 29888 | 0.68 | 0.903571 |
Target: 5'- --cGCCAGCgcccggGCcCGCGGcAGCgCGCGAg -3' miRNA: 3'- uaaUGGUUGa-----UGaGCGUC-UCG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 29823 | 0.67 | 0.947603 |
Target: 5'- --cGCCcGCgccgcGCUCGCcGAGCUGCGc -3' miRNA: 3'- uaaUGGuUGa----UGAGCGuCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 29406 | 0.67 | 0.927653 |
Target: 5'- --gGCCGcgcGCUACgcggcggcCGCGGGGCCcGCGGc -3' miRNA: 3'- uaaUGGU---UGAUGa-------GCGUCUCGG-CGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 28609 | 0.69 | 0.882847 |
Target: 5'- --cGCCGA--GCUgGCGGAGCUGUGGc -3' miRNA: 3'- uaaUGGUUgaUGAgCGUCUCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 23892 | 0.66 | 0.963176 |
Target: 5'- --gGCCGGCUaggguggGCUCGCuGGGCUGgGc -3' miRNA: 3'- uaaUGGUUGA-------UGAGCGuCUCGGCgCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 23247 | 0.67 | 0.943001 |
Target: 5'- --gGCCGGcCUGCUCGggcgAGAGCUGCa- -3' miRNA: 3'- uaaUGGUU-GAUGAGCg---UCUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 22731 | 0.67 | 0.927653 |
Target: 5'- --gACCAGCgccaguCgggCGCGGGGCgGCGGc -3' miRNA: 3'- uaaUGGUUGau----Ga--GCGUCUCGgCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 15232 | 0.75 | 0.530354 |
Target: 5'- --aGCCGGCguugaggccccGCUCGCAGugGGCCGCGAu -3' miRNA: 3'- uaaUGGUUGa----------UGAGCGUC--UCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 14439 | 0.74 | 0.603733 |
Target: 5'- --aACuCGGCUcGCUCGCGGGGCgCGCGGc -3' miRNA: 3'- uaaUG-GUUGA-UGAGCGUCUCG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 13040 | 0.66 | 0.959911 |
Target: 5'- --aGCCAGgg---CGCGGGGCCGCGc -3' miRNA: 3'- uaaUGGUUgaugaGCGUCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 5137 | 0.69 | 0.849404 |
Target: 5'- --cGCCGGC-GCUCGCGcgccucggcccggcGGGCCGCGu -3' miRNA: 3'- uaaUGGUUGaUGAGCGU--------------CUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 4165 | 0.67 | 0.933027 |
Target: 5'- --cGCCAGCUGCagGUccGGGCCcGCGAg -3' miRNA: 3'- uaaUGGUUGAUGagCGu-CUCGG-CGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 3800 | 0.72 | 0.740488 |
Target: 5'- --cGCCAGCUcgcgcagccGCUCGCGcgcuGCCGCGGg -3' miRNA: 3'- uaaUGGUUGA---------UGAGCGUcu--CGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 3434 | 0.66 | 0.963527 |
Target: 5'- --gGCCAGCguccagGCgggCGCGcGGGCCGCc- -3' miRNA: 3'- uaaUGGUUGa-----UGa--GCGU-CUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 3361 | 0.67 | 0.947603 |
Target: 5'- --cGCCGGC--CUU-CAGGGCCGCGAg -3' miRNA: 3'- uaaUGGUUGauGAGcGUCUCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 2730 | 0.66 | 0.959911 |
Target: 5'- --gGCCGACUugcGCUUGC---GCCGCGGc -3' miRNA: 3'- uaaUGGUUGA---UGAGCGucuCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 2052 | 0.68 | 0.902916 |
Target: 5'- --gGCCAGCcGCagGCAGAgguacucgaccgcGCCGCGGa -3' miRNA: 3'- uaaUGGUUGaUGagCGUCU-------------CGGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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