Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23817 | 3' | -52.8 | NC_005261.1 | + | 132088 | 0.71 | 0.799113 |
Target: 5'- --cGCC-GCUGC-CGCGGAgggcgGCCGCGAc -3' miRNA: 3'- uaaUGGuUGAUGaGCGUCU-----CGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 51674 | 0.7 | 0.817452 |
Target: 5'- --gGCCGcgaGCUGCaUCGCGGucGCCGCGc -3' miRNA: 3'- uaaUGGU---UGAUG-AGCGUCu-CGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 60108 | 0.69 | 0.867042 |
Target: 5'- --gGCCAGCgcGCcCGCGGgcacguaGGCCGCGAa -3' miRNA: 3'- uaaUGGUUGa-UGaGCGUC-------UCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 47568 | 0.69 | 0.867818 |
Target: 5'- -gUGCCcgUcGCgcauggCGCAGAGCCGCGc -3' miRNA: 3'- uaAUGGuuGaUGa-----GCGUCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 55172 | 0.69 | 0.867818 |
Target: 5'- --cGCCGGCgGCUCGCGGGGCgGauCGGc -3' miRNA: 3'- uaaUGGUUGaUGAGCGUCUCGgC--GCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 87457 | 0.69 | 0.87545 |
Target: 5'- --cGCCGcgcCUGCUCGCAG-GCgCGCGu -3' miRNA: 3'- uaaUGGUu--GAUGAGCGUCuCG-GCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 102943 | 0.69 | 0.87545 |
Target: 5'- --cGCCGccGCUGCg-GCGGcGGCCGCGGg -3' miRNA: 3'- uaaUGGU--UGAUGagCGUC-UCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 44676 | 0.69 | 0.87545 |
Target: 5'- --cGCCuggaGACguacCUCGCGGAGCuCGCGGc -3' miRNA: 3'- uaaUGG----UUGau--GAGCGUCUCG-GCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 72952 | 0.69 | 0.882118 |
Target: 5'- --cGCCGGCaccgGCUCGCgcccgccgccgcgGGGGuCCGCGAg -3' miRNA: 3'- uaaUGGUUGa---UGAGCG-------------UCUC-GGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 28609 | 0.69 | 0.882847 |
Target: 5'- --cGCCGA--GCUgGCGGAGCUGUGGc -3' miRNA: 3'- uaaUGGUUgaUGAgCGUCUCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 97168 | 0.69 | 0.859956 |
Target: 5'- --gGCCGGCUgGgUCGCGGgcgccggccgGGCCGCGGc -3' miRNA: 3'- uaaUGGUUGA-UgAGCGUC----------UCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 128127 | 0.69 | 0.855132 |
Target: 5'- --gGCCGAgUGCggagagaggcgacggUCGcCGGGGCCGCGGg -3' miRNA: 3'- uaaUGGUUgAUG---------------AGC-GUCUCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 122323 | 0.7 | 0.817452 |
Target: 5'- --gGCCGGCggucagguggcGCUCGCAGAGCuCGCc- -3' miRNA: 3'- uaaUGGUUGa----------UGAGCGUCUCG-GCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 104823 | 0.7 | 0.835062 |
Target: 5'- ----gCAGCgGCgUCGCGGGGCCGCGc -3' miRNA: 3'- uaaugGUUGaUG-AGCGUCUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 1669 | 0.7 | 0.84357 |
Target: 5'- --gGCCAugUcCUUGCGcccgucGAGCCGCGGc -3' miRNA: 3'- uaaUGGUugAuGAGCGU------CUCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 59182 | 0.7 | 0.84357 |
Target: 5'- --cGCCGACUGCUCGUAGGaCaCGaCGAc -3' miRNA: 3'- uaaUGGUUGAUGAGCGUCUcG-GC-GCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 5137 | 0.69 | 0.849404 |
Target: 5'- --cGCCGGC-GCUCGCGcgccucggcccggcGGGCCGCGu -3' miRNA: 3'- uaaUGGUUGaUGAGCGU--------------CUCGGCGCu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 104769 | 0.69 | 0.851871 |
Target: 5'- --gGCCAGCacccGCUCGaaCAG-GCCGCGAu -3' miRNA: 3'- uaaUGGUUGa---UGAGC--GUCuCGGCGCU- -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 67947 | 0.69 | 0.851871 |
Target: 5'- --cGCCGGCccGCUCGCGcGGCCGCc- -3' miRNA: 3'- uaaUGGUUGa-UGAGCGUcUCGGCGcu -5' |
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23817 | 3' | -52.8 | NC_005261.1 | + | 123409 | 0.69 | 0.851871 |
Target: 5'- cUUGCCGGCcaggggcggGCUCGCcacGGGCCGCa- -3' miRNA: 3'- uAAUGGUUGa--------UGAGCGu--CUCGGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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