miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23817 5' -55.8 NC_005261.1 + 30174 0.66 0.873438
Target:  5'- -cCCGCCGCGCUGCGcgccGAGgcgGC-CGc -3'
miRNA:   3'- caGGUGGCGUGACGC----UUCacaCGaGC- -5'
23817 5' -55.8 NC_005261.1 + 103819 0.66 0.894506
Target:  5'- -cCCGCCGCcagcaGCUcGCGGAGga-GCUCGc -3'
miRNA:   3'- caGGUGGCG-----UGA-CGCUUCacaCGAGC- -5'
23817 5' -55.8 NC_005261.1 + 79855 0.66 0.901065
Target:  5'- -gCCGCCGCGCUGgGGu-UGaGCUUGg -3'
miRNA:   3'- caGGUGGCGUGACgCUucACaCGAGC- -5'
23817 5' -55.8 NC_005261.1 + 36961 0.67 0.833991
Target:  5'- -cCCGCCGCGCgGCGcAGa--GCUCGg -3'
miRNA:   3'- caGGUGGCGUGaCGCuUCacaCGAGC- -5'
23817 5' -55.8 NC_005261.1 + 131843 0.67 0.833991
Target:  5'- -cCCGCC-UGCUGCGggGUGUccaagcggcuGCUUGa -3'
miRNA:   3'- caGGUGGcGUGACGCuuCACA----------CGAGC- -5'
23817 5' -55.8 NC_005261.1 + 124935 0.67 0.850383
Target:  5'- cUCCGCCGCGC-GCGc--UGUGC-CGg -3'
miRNA:   3'- cAGGUGGCGUGaCGCuucACACGaGC- -5'
23817 5' -55.8 NC_005261.1 + 133648 0.68 0.789868
Target:  5'- -gCCGCUGCGCgaGCGcuGcGUGCUCGc -3'
miRNA:   3'- caGGUGGCGUGa-CGCuuCaCACGAGC- -5'
23817 5' -55.8 NC_005261.1 + 111764 0.68 0.799018
Target:  5'- cGUgCACCuGCGCUGCGcgcccgGGGUGUGCc-- -3'
miRNA:   3'- -CAgGUGG-CGUGACGC------UUCACACGagc -5'
23817 5' -55.8 NC_005261.1 + 105742 0.69 0.751904
Target:  5'- cGUCCACgaacuCGCGC-GCGggGaccuggGUGCUCa -3'
miRNA:   3'- -CAGGUG-----GCGUGaCGCuuCa-----CACGAGc -5'
23817 5' -55.8 NC_005261.1 + 43425 0.7 0.702094
Target:  5'- cUCCGCCGC-CgGCGggGagcUG-GCUCGg -3'
miRNA:   3'- cAGGUGGCGuGaCGCuuC---ACaCGAGC- -5'
23817 5' -55.8 NC_005261.1 + 135413 0.74 0.488615
Target:  5'- cUCUACCGCAUguuCGAGGUGcGCUCGc -3'
miRNA:   3'- cAGGUGGCGUGac-GCUUCACaCGAGC- -5'
23817 5' -55.8 NC_005261.1 + 24436 0.75 0.388655
Target:  5'- gGUCCGCgGCGaugGaCGAGGUGUGCUCc -3'
miRNA:   3'- -CAGGUGgCGUga-C-GCUUCACACGAGc -5'
23817 5' -55.8 NC_005261.1 + 9368 0.82 0.167881
Target:  5'- aUCCccgggaGCCGCAUUGCGAGGUGaGCUCGg -3'
miRNA:   3'- cAGG------UGGCGUGACGCUUCACaCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.