Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23818 | 5' | -52.6 | NC_005261.1 | + | 32502 | 0.66 | 0.97323 |
Target: 5'- gGCGGCaucgGCGGGgggUCCGcgccGCGCCCgGCc -3' miRNA: 3'- -CGUUGa---UGCUCa--AGGU----CGCGGGaUGc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 100199 | 0.66 | 0.97323 |
Target: 5'- gGCAGCgugGCGg---CCAGCaGCCCcGCGu -3' miRNA: 3'- -CGUUGa--UGCucaaGGUCG-CGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 67424 | 0.66 | 0.97323 |
Target: 5'- aGCAGCgcccGCGg---CCAGCGCCCa--- -3' miRNA: 3'- -CGUUGa---UGCucaaGGUCGCGGGaugc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 124076 | 0.66 | 0.97323 |
Target: 5'- cCGACUGC-AGc-CCGGCGCCC-GCGu -3' miRNA: 3'- cGUUGAUGcUCaaGGUCGCGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 99482 | 0.66 | 0.970358 |
Target: 5'- gGCcGCUGCGg---CCAGCGCCgCcGCGu -3' miRNA: 3'- -CGuUGAUGCucaaGGUCGCGG-GaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 102531 | 0.66 | 0.970358 |
Target: 5'- uGCAGCUugGccgccugcGGccCCAgGCGCCCgGCGg -3' miRNA: 3'- -CGUUGAugC--------UCaaGGU-CGCGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 60097 | 0.66 | 0.970358 |
Target: 5'- aGCAGC-ACGcuggCCAGCGCgCCcGCGg -3' miRNA: 3'- -CGUUGaUGCucaaGGUCGCG-GGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 20955 | 0.66 | 0.970059 |
Target: 5'- gGCuguUUACGAGgUCguggaccgcggcgCGGCGCCCUACc -3' miRNA: 3'- -CGuu-GAUGCUCaAG-------------GUCGCGGGAUGc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 72843 | 0.66 | 0.967272 |
Target: 5'- uCGGCca-GGGcgCCAGCGCCCagGCGu -3' miRNA: 3'- cGUUGaugCUCaaGGUCGCGGGa-UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 115194 | 0.66 | 0.967272 |
Target: 5'- uCAGC-ACGGc--CCAGCGCCCgUGCGu -3' miRNA: 3'- cGUUGaUGCUcaaGGUCGCGGG-AUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 126034 | 0.66 | 0.967272 |
Target: 5'- cGCGGCcgcgcgUACGAGUgcucccgcUCCGGCGCCagcCGc -3' miRNA: 3'- -CGUUG------AUGCUCA--------AGGUCGCGGgauGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 3846 | 0.67 | 0.963966 |
Target: 5'- gGCGGCaGCG-GcgCCGGCGCCgcGCGg -3' miRNA: 3'- -CGUUGaUGCuCaaGGUCGCGGgaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 14976 | 0.67 | 0.963966 |
Target: 5'- gGCGACUGCGcGgccgcgCCGgccGCGCCCggagcGCGg -3' miRNA: 3'- -CGUUGAUGCuCaa----GGU---CGCGGGa----UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 52978 | 0.67 | 0.963966 |
Target: 5'- uGCGGCgccggcagGCGGGgg-CGGCGCCCagGCGu -3' miRNA: 3'- -CGUUGa-------UGCUCaagGUCGCGGGa-UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 53579 | 0.67 | 0.960433 |
Target: 5'- aGCGGCcGCGGGccggCGGCGCCCcaGCGg -3' miRNA: 3'- -CGUUGaUGCUCaag-GUCGCGGGa-UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 74478 | 0.67 | 0.960433 |
Target: 5'- cGCGGCgugccuggGCGGGaUCuCGGCGCUCUuCGg -3' miRNA: 3'- -CGUUGa-------UGCUCaAG-GUCGCGGGAuGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 132700 | 0.67 | 0.960433 |
Target: 5'- cGUGGCcgUGCccGUcCCGGCGCCCUACc -3' miRNA: 3'- -CGUUG--AUGcuCAaGGUCGCGGGAUGc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 135285 | 0.67 | 0.960433 |
Target: 5'- uGCAGaacgGCGGGUUCCGcgcgaccggcguGuCGCCCUggGCGg -3' miRNA: 3'- -CGUUga--UGCUCAAGGU------------C-GCGGGA--UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 105157 | 0.67 | 0.956668 |
Target: 5'- cGCGGCU-CGAGgg-CGGCGUCC-ACGg -3' miRNA: 3'- -CGUUGAuGCUCaagGUCGCGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 102248 | 0.67 | 0.956668 |
Target: 5'- cGCccGCUGCGcGcucgccUCCAGCGCCCgguCGg -3' miRNA: 3'- -CGu-UGAUGCuCa-----AGGUCGCGGGau-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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