miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 122133 0.7 0.797918
Target:  5'- aGGUACUGCAGgugguggugcacgGCCGACGCcaGCuCGa -3'
miRNA:   3'- aCCGUGACGUC-------------UGGCUGUGuaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 122043 0.71 0.769512
Target:  5'- cGGCACUGCGcgcggauGGCCGAgAuCAUGUACGg -3'
miRNA:   3'- aCCGUGACGU-------CUGGCUgU-GUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 121821 0.76 0.473739
Target:  5'- gGGCuCUGCGGGCCGcCGCGgcgGCGCa -3'
miRNA:   3'- aCCGuGACGUCUGGCuGUGUa--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 120407 0.68 0.914834
Target:  5'- cGGCGuCUGCgcugagcggccuGGGCUGGugaACAUGCGCGg -3'
miRNA:   3'- aCCGU-GACG------------UCUGGCUg--UGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 119625 0.67 0.925782
Target:  5'- cGuGCACUGCGGcgugGCCGACAacgccacCGgcgGCGCGc -3'
miRNA:   3'- aC-CGUGACGUC----UGGCUGU-------GUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 119221 0.66 0.957544
Target:  5'- aUGGCcCUGCcggggcgagcguGGCCGAUcgcggccaucuucGCAUGCGCGc -3'
miRNA:   3'- -ACCGuGACGu-----------CUGGCUG-------------UGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118922 0.74 0.595424
Target:  5'- cGGCGCcGCGGGCgCGGCGCc-GCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUG-GCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118833 0.69 0.862179
Target:  5'- cGGCACUGCcgcucugcggcgcggAGGgCGGCGCGccCGCGg -3'
miRNA:   3'- aCCGUGACG---------------UCUgGCUGUGUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118679 0.66 0.946305
Target:  5'- gGGCg--GCGGgcGCUGGCGCAcGCGCGg -3'
miRNA:   3'- aCCGugaCGUC--UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118495 0.73 0.658492
Target:  5'- cGGCGCUGCGGACCcuGGCGCc-GCuCGg -3'
miRNA:   3'- aCCGUGACGUCUGG--CUGUGuaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 115116 0.68 0.895032
Target:  5'- cGGCGCUGCcca-CGGCGCccacgauggugucGUACACGa -3'
miRNA:   3'- aCCGUGACGucugGCUGUG-------------UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 114328 0.66 0.965754
Target:  5'- cGGCGCaagGUGGACUGGCuCGagcgGCGCGu -3'
miRNA:   3'- aCCGUGa--CGUCUGGCUGuGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 113907 0.69 0.874397
Target:  5'- gGGCGCgau-GGCCGAgGCAgcggGCGCGg -3'
miRNA:   3'- aCCGUGacguCUGGCUgUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 112447 0.78 0.373302
Target:  5'- cUGGCACUGCgacgugcGGGCCGugcuaaACAUGCGCGg -3'
miRNA:   3'- -ACCGUGACG-------UCUGGCug----UGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 112125 0.66 0.950674
Target:  5'- cGGCGCUGU--ACCGGCAgcuaguCGUGCccGCGa -3'
miRNA:   3'- aCCGUGACGucUGGCUGU------GUAUG--UGC- -5'
23819 3' -53.3 NC_005261.1 + 110385 0.67 0.931704
Target:  5'- aUGGCGCUGCGG-CUGGacCGCuucUACGCc -3'
miRNA:   3'- -ACCGUGACGUCuGGCU--GUGu--AUGUGc -5'
23819 3' -53.3 NC_005261.1 + 109211 0.75 0.564163
Target:  5'- aGGCGCUcGUAGGCgCGGCACGccGCGCGc -3'
miRNA:   3'- aCCGUGA-CGUCUG-GCUGUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 108895 0.66 0.950674
Target:  5'- -cGCGCUGCccGCCGGCgaGCGggGCGCGg -3'
miRNA:   3'- acCGUGACGucUGGCUG--UGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 107465 0.69 0.851026
Target:  5'- cGGCACcGCAGuCCcGCGCccACGCGa -3'
miRNA:   3'- aCCGUGaCGUCuGGcUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 107296 0.66 0.958685
Target:  5'- aGGCACUccgccGCGGccacgGCCGcCGCGUGCAg- -3'
miRNA:   3'- aCCGUGA-----CGUC-----UGGCuGUGUAUGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.