miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 130356 0.69 0.851026
Target:  5'- -cGCGCUGCGGguccucuacgccACCGACGgcUGCGCGa -3'
miRNA:   3'- acCGUGACGUC------------UGGCUGUguAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44321 0.69 0.851026
Target:  5'- gGGCGCcGCAGACggggGGCugGgGCACGa -3'
miRNA:   3'- aCCGUGaCGUCUGg---CUGugUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 107465 0.69 0.851026
Target:  5'- cGGCACcGCAGuCCcGCGCccACGCGa -3'
miRNA:   3'- aCCGUGaCGUCuGGcUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 46072 0.69 0.851026
Target:  5'- gGGCGCcGCcucguGGCCgGACACGaGCACGu -3'
miRNA:   3'- aCCGUGaCGu----CUGG-CUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 33369 0.69 0.859035
Target:  5'- gGGCcgcgccggGCUGCGGGCCGcCGCAgcCGCc -3'
miRNA:   3'- aCCG--------UGACGUCUGGCuGUGUauGUGc -5'
23819 3' -53.3 NC_005261.1 + 34366 0.69 0.859035
Target:  5'- gGGCGCcgcGCGGcGCCGcGCGCAgACGCGg -3'
miRNA:   3'- aCCGUGa--CGUC-UGGC-UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 46159 0.69 0.859035
Target:  5'- cGGCACUGCGccccagucgccGAUgGGCGCAgucGCGCu -3'
miRNA:   3'- aCCGUGACGU-----------CUGgCUGUGUa--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 118833 0.69 0.862179
Target:  5'- cGGCACUGCcgcucugcggcgcggAGGgCGGCGCGccCGCGg -3'
miRNA:   3'- aCCGUGACG---------------UCUgGCUGUGUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 29566 0.69 0.866827
Target:  5'- cUGGCgcgccuGCUGCAG--CGGCGCGUGCAgGg -3'
miRNA:   3'- -ACCG------UGACGUCugGCUGUGUAUGUgC- -5'
23819 3' -53.3 NC_005261.1 + 30358 0.69 0.866827
Target:  5'- cGGCcCUGaAGGCCGGCGCGccggGCGCc -3'
miRNA:   3'- aCCGuGACgUCUGGCUGUGUa---UGUGc -5'
23819 3' -53.3 NC_005261.1 + 113907 0.69 0.874397
Target:  5'- gGGCGCgau-GGCCGAgGCAgcggGCGCGg -3'
miRNA:   3'- aCCGUGacguCUGGCUgUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 126699 0.69 0.874397
Target:  5'- cGGCGgUGCGGgaagcgGCUGGuuCGCGUGCGCGu -3'
miRNA:   3'- aCCGUgACGUC------UGGCU--GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 133317 0.69 0.874397
Target:  5'- cUGGCuGCUcgcGCAGcuccuGCCGGCACGcGCGCGc -3'
miRNA:   3'- -ACCG-UGA---CGUC-----UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 95793 0.69 0.874397
Target:  5'- gGcGCGCUGCuaGCCGGCGCcgGCGgGg -3'
miRNA:   3'- aC-CGUGACGucUGGCUGUGuaUGUgC- -5'
23819 3' -53.3 NC_005261.1 + 10425 0.69 0.881736
Target:  5'- gGGUGCUGUgcccACgGACGCGUGCugGg -3'
miRNA:   3'- aCCGUGACGuc--UGgCUGUGUAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 37382 0.69 0.881736
Target:  5'- cGGCGCUGUGGuacGCgGACACcaaaagggcGUACugGg -3'
miRNA:   3'- aCCGUGACGUC---UGgCUGUG---------UAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 136792 0.69 0.881736
Target:  5'- aGGCGgUGCAGGCCaGugGCGgGCuCGu -3'
miRNA:   3'- aCCGUgACGUCUGG-CugUGUaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 53595 0.69 0.881736
Target:  5'- cGGCGCcccaGCGGACCGACGag-GC-CGu -3'
miRNA:   3'- aCCGUGa---CGUCUGGCUGUguaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 74754 0.69 0.881736
Target:  5'- cUGGCGCgGCAG-CgCGcCACAgGCGCGg -3'
miRNA:   3'- -ACCGUGaCGUCuG-GCuGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 89946 0.69 0.881736
Target:  5'- gUGGCGCgGCuGGCCGGgauCACAgugccGCGCGc -3'
miRNA:   3'- -ACCGUGaCGuCUGGCU---GUGUa----UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.