miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 49472 0.67 0.936822
Target:  5'- gGGCGC-GCAGGCCG-CGCGgaaGCu -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUGUaugUGc -5'
23819 3' -53.3 NC_005261.1 + 50887 0.68 0.90808
Target:  5'- cUGGCGCUGCuaugcuggucaccuuGAUCGGCGCcgccucgccggGCGCGg -3'
miRNA:   3'- -ACCGUGACGu--------------CUGGCUGUGua---------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 51368 0.66 0.965754
Target:  5'- cGGCGCggaguacgcGCAGGCCGuGCGCGaacucCGCGa -3'
miRNA:   3'- aCCGUGa--------CGUCUGGC-UGUGUau---GUGC- -5'
23819 3' -53.3 NC_005261.1 + 51477 0.66 0.958685
Target:  5'- cUGGCGCUGaucACCGGCGCc-GCGCc -3'
miRNA:   3'- -ACCGUGACgucUGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 51782 0.66 0.965754
Target:  5'- cGGCGucgccCUGCuGGCCGugGcCAUGCuCGu -3'
miRNA:   3'- aCCGU-----GACGuCUGGCugU-GUAUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 52228 0.68 0.89299
Target:  5'- cGGCGCUGCGG-CCGGUACGguuucgugggaggGCGCu -3'
miRNA:   3'- aCCGUGACGUCuGGCUGUGUa------------UGUGc -5'
23819 3' -53.3 NC_005261.1 + 52980 0.66 0.962334
Target:  5'- cGGCGCcgGCAGGCgGGgGCG-GCGCc -3'
miRNA:   3'- aCCGUGa-CGUCUGgCUgUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 53115 0.73 0.67943
Target:  5'- cGGCGCUGCGcGCCGccaacaggGCGgCGUACGCGc -3'
miRNA:   3'- aCCGUGACGUcUGGC--------UGU-GUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 53595 0.69 0.881736
Target:  5'- cGGCGCcccaGCGGACCGACGag-GC-CGu -3'
miRNA:   3'- aCCGUGa---CGUCUGGCUGUguaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 53721 0.66 0.9548
Target:  5'- cGGCcaGCUGCGGcgcGCCcGCACGggcgaGCACGu -3'
miRNA:   3'- aCCG--UGACGUC---UGGcUGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 54082 0.68 0.898386
Target:  5'- aGGcCGC-GCGGACCGcCACGUugccgauggccgcccGCACGa -3'
miRNA:   3'- aCC-GUGaCGUCUGGCuGUGUA---------------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 54855 0.71 0.780077
Target:  5'- cGGCGCcGCAGGCUGA-ACccGCACGg -3'
miRNA:   3'- aCCGUGaCGUCUGGCUgUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 55178 0.7 0.825771
Target:  5'- cGGCucGCgggGCGGAUCGGCGCAcggcguaGCGCGg -3'
miRNA:   3'- aCCG--UGa--CGUCUGGCUGUGUa------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 57502 0.67 0.936822
Target:  5'- gGGCACgucccggcgGCGGGCCuucuucCACAgGCACGg -3'
miRNA:   3'- aCCGUGa--------CGUCUGGcu----GUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 57538 0.66 0.962334
Target:  5'- nGGCGCgGCGcACgGGCACAcgucGCACGc -3'
miRNA:   3'- aCCGUGaCGUcUGgCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 58418 0.75 0.561059
Target:  5'- gGuGCACUGCAGccGCCGcgagaagcccacgcACGCGUACGCGu -3'
miRNA:   3'- aC-CGUGACGUC--UGGC--------------UGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 58472 0.71 0.770479
Target:  5'- gGGCGCguaugagccGCAGGCCGGCGCGcggccgcuuUugGCGc -3'
miRNA:   3'- aCCGUGa--------CGUCUGGCUGUGU---------AugUGC- -5'
23819 3' -53.3 NC_005261.1 + 59130 0.67 0.931704
Target:  5'- cGGCcaccgACU-CAGGCCGGCGCGccccggGCGCGc -3'
miRNA:   3'- aCCG-----UGAcGUCUGGCUGUGUa-----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 59421 0.67 0.931178
Target:  5'- cGGCGCUgucgcgcggcccgGCAGgcGCCGGCAgCA-GCGCGg -3'
miRNA:   3'- aCCGUGA-------------CGUC--UGGCUGU-GUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 59796 0.68 0.914834
Target:  5'- cGGCggGCgGCAGGCCGGCGug-GCGCc -3'
miRNA:   3'- aCCG--UGaCGUCUGGCUGUguaUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.