miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 88192 0.67 0.941688
Target:  5'- cGGCGCcggcgagGCGGGCCG-CGCcgGCAa- -3'
miRNA:   3'- aCCGUGa------CGUCUGGCuGUGuaUGUgc -5'
23819 3' -53.3 NC_005261.1 + 103506 0.67 0.941688
Target:  5'- cGGCGCcGCGGA-CGGCgGCGUcCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUgGCUG-UGUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 15746 0.67 0.941688
Target:  5'- -cGCGC-GCAGGCCGACcgccucgccGCgAUACACa -3'
miRNA:   3'- acCGUGaCGUCUGGCUG---------UG-UAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 59796 0.68 0.914834
Target:  5'- cGGCggGCgGCAGGCCGGCGug-GCGCc -3'
miRNA:   3'- aCCG--UGaCGUCUGGCUGUguaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 52228 0.68 0.89299
Target:  5'- cGGCGCUGCGG-CCGGUACGguuucgugggaggGCGCu -3'
miRNA:   3'- aCCGUGACGUCuGGCUGUGUa------------UGUGc -5'
23819 3' -53.3 NC_005261.1 + 115116 0.68 0.895032
Target:  5'- cGGCGCUGCcca-CGGCGCccacgauggugucGUACACGa -3'
miRNA:   3'- aCCGUGACGucugGCUGUG-------------UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75481 0.68 0.895707
Target:  5'- cGGCGgcGCGGGCCGcUACGaGCGCGg -3'
miRNA:   3'- aCCGUgaCGUCUGGCuGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 106415 0.68 0.895707
Target:  5'- cGGCGCUGCAG-CgGGcCGCGgucCACGc -3'
miRNA:   3'- aCCGUGACGUCuGgCU-GUGUau-GUGC- -5'
23819 3' -53.3 NC_005261.1 + 54082 0.68 0.898386
Target:  5'- aGGcCGC-GCGGACCGcCACGUugccgauggccgcccGCACGa -3'
miRNA:   3'- aCC-GUGaCGUCUGGCuGUGUA---------------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 48024 0.68 0.90233
Target:  5'- cGGCAgaGCAGGgCGaggaGCACGcGCGCGc -3'
miRNA:   3'- aCCGUgaCGUCUgGC----UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 64096 0.68 0.90233
Target:  5'- uUGGCGCccacaaAGugCGGCACGggcgGCACGu -3'
miRNA:   3'- -ACCGUGacg---UCugGCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 74065 0.68 0.90233
Target:  5'- cGGCAgCUGCGcGAcgcggcCCGGCuuGUGCGCGa -3'
miRNA:   3'- aCCGU-GACGU-CU------GGCUGugUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 89202 0.68 0.90233
Target:  5'- gGGCGCcG-AGGCCGACGCGUgGCcCGa -3'
miRNA:   3'- aCCGUGaCgUCUGGCUGUGUA-UGuGC- -5'
23819 3' -53.3 NC_005261.1 + 105867 0.68 0.90233
Target:  5'- cGGCGaUGCGGuUgGGCAgGUGCACGa -3'
miRNA:   3'- aCCGUgACGUCuGgCUGUgUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 72600 0.68 0.906186
Target:  5'- cGGCGCgcaaauguaccggGCGGGCgGGCGCAgGgGCGg -3'
miRNA:   3'- aCCGUGa------------CGUCUGgCUGUGUaUgUGC- -5'
23819 3' -53.3 NC_005261.1 + 13295 0.68 0.90808
Target:  5'- gGGCGCaGguGugCGACGggggccuCGUACGCa -3'
miRNA:   3'- aCCGUGaCguCugGCUGU-------GUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 50887 0.68 0.90808
Target:  5'- cUGGCGCUGCuaugcuggucaccuuGAUCGGCGCcgccucgccggGCGCGg -3'
miRNA:   3'- -ACCGUGACGu--------------CUGGCUGUGua---------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 22816 0.68 0.908706
Target:  5'- cGGCGCUGCc-GCCGcCGcCGUugGCGc -3'
miRNA:   3'- aCCGUGACGucUGGCuGU-GUAugUGC- -5'
23819 3' -53.3 NC_005261.1 + 43149 0.68 0.908706
Target:  5'- cGGC-CUGCGcgccGCCGACAUcgcgGCGCGa -3'
miRNA:   3'- aCCGuGACGUc---UGGCUGUGua--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 68136 0.68 0.908706
Target:  5'- cGGCGCgGCGaccgcgccguGGCCGGCuACAcGCGCGc -3'
miRNA:   3'- aCCGUGaCGU----------CUGGCUG-UGUaUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.