miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 60123 0.66 0.965754
Target:  5'- gGGCAC-GUAGGCCG-CGa--ACACGg -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 60152 0.72 0.720734
Target:  5'- aGGCGCUGCAGgcGCCGcugccguggaaGCGCGUcuGCGCc -3'
miRNA:   3'- aCCGUGACGUC--UGGC-----------UGUGUA--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 61034 0.75 0.523212
Target:  5'- cGGCACcGCGGcaGCUGGCugGUGCugGg -3'
miRNA:   3'- aCCGUGaCGUC--UGGCUGugUAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 62832 0.66 0.946305
Target:  5'- gGGCACcgGCgggGGACUGGCGCGcccCGCGc -3'
miRNA:   3'- aCCGUGa-CG---UCUGGCUGUGUau-GUGC- -5'
23819 3' -53.3 NC_005261.1 + 63337 0.73 0.637465
Target:  5'- gUGGCGCUGCgAGGCCcACGgGUuCACGg -3'
miRNA:   3'- -ACCGUGACG-UCUGGcUGUgUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 64096 0.68 0.90233
Target:  5'- uUGGCGCccacaaAGugCGGCACGggcgGCACGu -3'
miRNA:   3'- -ACCGUGacg---UCugGCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 64958 0.66 0.950248
Target:  5'- cGGCACUGUguacucguccacgAGccGCCGcaGCGCGUGCAgGu -3'
miRNA:   3'- aCCGUGACG-------------UC--UGGC--UGUGUAUGUgC- -5'
23819 3' -53.3 NC_005261.1 + 66287 0.68 0.914834
Target:  5'- cGGCugUcGCAGugCGucagGCGCG-GCACGg -3'
miRNA:   3'- aCCGugA-CGUCugGC----UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 68136 0.68 0.908706
Target:  5'- cGGCGCgGCGaccgcgccguGGCCGGCuACAcGCGCGc -3'
miRNA:   3'- aCCGUGaCGU----------CUGGCUG-UGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 68873 0.66 0.962334
Target:  5'- cGGCugUGC--GCCGucguGCGC-UGCGCGg -3'
miRNA:   3'- aCCGugACGucUGGC----UGUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 69514 0.66 0.9548
Target:  5'- cGGCggGCUGcCGGAgCUGGCGCGgGCGCu -3'
miRNA:   3'- aCCG--UGAC-GUCU-GGCUGUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 70381 0.78 0.37414
Target:  5'- cGGCGCcGCuGGCCGACAC--GCACGa -3'
miRNA:   3'- aCCGUGaCGuCUGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 70887 0.71 0.760751
Target:  5'- cGGCGgUGCAcauGGCCGuGCACuUGCGCGc -3'
miRNA:   3'- aCCGUgACGU---CUGGC-UGUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 71856 0.67 0.926333
Target:  5'- cUGGCGCucgcgccgcuUGCGGuCCGcccGCGCGgGCACGa -3'
miRNA:   3'- -ACCGUG----------ACGUCuGGC---UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 71964 0.67 0.936822
Target:  5'- cGGCGCggggcGCGGagcGCgCGGCAgGUGCGCa -3'
miRNA:   3'- aCCGUGa----CGUC---UG-GCUGUgUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 72600 0.68 0.906186
Target:  5'- cGGCGCgcaaauguaccggGCGGGCgGGCGCAgGgGCGg -3'
miRNA:   3'- aCCGUGa------------CGUCUGgCUGUGUaUgUGC- -5'
23819 3' -53.3 NC_005261.1 + 72933 0.66 0.965754
Target:  5'- gGGUgucGC-GCAGcGCCGGCGCcgGCACc -3'
miRNA:   3'- aCCG---UGaCGUC-UGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 74065 0.68 0.90233
Target:  5'- cGGCAgCUGCGcGAcgcggcCCGGCuuGUGCGCGa -3'
miRNA:   3'- aCCGU-GACGU-CU------GGCUGugUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 74754 0.69 0.881736
Target:  5'- cUGGCGCgGCAG-CgCGcCACAgGCGCGg -3'
miRNA:   3'- -ACCGUGaCGUCuG-GCuGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 74939 0.68 0.888841
Target:  5'- gGGgACUGCGGcGCgGGCGCGcucgGCGCGc -3'
miRNA:   3'- aCCgUGACGUC-UGgCUGUGUa---UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.