miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2382 3' -59.5 NC_001416.1 + 5730 0.66 0.461472
Target:  5'- cCUGCaGCCAG-CGGUGCCGGu--GCc -3'
miRNA:   3'- -GACGcUGGUCaGUCACGGCCugcCGa -5'
2382 3' -59.5 NC_001416.1 + 5208 0.66 0.461472
Target:  5'- gCUGCaGugUacagcGGUCAGgaggccauugaUGCCGGACuGGCUg -3'
miRNA:   3'- -GACG-CugG-----UCAGUC-----------ACGGCCUG-CCGA- -5'
2382 3' -59.5 NC_001416.1 + 20086 0.66 0.451714
Target:  5'- -cGCGccGCCAG-CAcGUccGCCGGACaGGCUg -3'
miRNA:   3'- gaCGC--UGGUCaGU-CA--CGGCCUG-CCGA- -5'
2382 3' -59.5 NC_001416.1 + 9147 0.66 0.44207
Target:  5'- aCUGCGACCGGgCAGgggcagaaaucUGCCGGAgauacCaGCUu -3'
miRNA:   3'- -GACGCUGGUCaGUC-----------ACGGCCU-----GcCGA- -5'
2382 3' -59.5 NC_001416.1 + 17481 0.67 0.404699
Target:  5'- -aGCGGCUGGUCAGcacgGCCcGGACGaCg -3'
miRNA:   3'- gaCGCUGGUCAGUCa---CGG-CCUGCcGa -5'
2382 3' -59.5 NC_001416.1 + 4740 0.68 0.3283
Target:  5'- -gGCuGACCAG-C-GUGCCGGAcacCGGCa -3'
miRNA:   3'- gaCG-CUGGUCaGuCACGGCCU---GCCGa -5'
2382 3' -59.5 NC_001416.1 + 14948 0.69 0.305317
Target:  5'- -aGCuGugUGGcCAGUGcCCGGAUGGCUu -3'
miRNA:   3'- gaCG-CugGUCaGUCAC-GGCCUGCCGA- -5'
2382 3' -59.5 NC_001416.1 + 20217 0.77 0.084832
Target:  5'- -gGCGGCCAc-CAGUGCCGGuGCGGCg -3'
miRNA:   3'- gaCGCUGGUcaGUCACGGCC-UGCCGa -5'
2382 3' -59.5 NC_001416.1 + 20892 0.79 0.058663
Target:  5'- -gGCGuuCCGGUCAGUGCCGGACuguccagugGGCUu -3'
miRNA:   3'- gaCGCu-GGUCAGUCACGGCCUG---------CCGA- -5'
2382 3' -59.5 NC_001416.1 + 16408 1.07 0.000442
Target:  5'- aCUGCGACCAGUCAGUGCCGGACGGCUu -3'
miRNA:   3'- -GACGCUGGUCAGUCACGGCCUGCCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.