miRNA display CGI


Results 41 - 60 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 65257 0.77 0.350134
Target:  5'- cCACCGUCGCCGgGUuCaGCCGGuGCCg -3'
miRNA:   3'- -GUGGUAGUGGCaCAuGcCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 76046 0.77 0.312594
Target:  5'- gCGCCAUCAgCGUGgcCGGCgGGcGCCa -3'
miRNA:   3'- -GUGGUAGUgGCACauGCCGgUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 34523 0.78 0.284819
Target:  5'- gCACCuUCGCCGUG-ACGGCCcgcGAGCUc -3'
miRNA:   3'- -GUGGuAGUGGCACaUGCCGGu--CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 98684 0.79 0.271678
Target:  5'- cCGCCGggGCCGgagGcGCGGCCGGAGCUg -3'
miRNA:   3'- -GUGGUagUGGCa--CaUGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 64668 0.79 0.25228
Target:  5'- cCACuCGUCGCCGUgGUGCGGCaccgggcgcguccCGGGGCCg -3'
miRNA:   3'- -GUG-GUAGUGGCA-CAUGCCG-------------GUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 86466 0.73 0.539148
Target:  5'- gGCCcgCGCCGUugauGgacGCGGCCGG-GCCg -3'
miRNA:   3'- gUGGuaGUGGCA----Ca--UGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 85918 0.72 0.559203
Target:  5'- gGCCugcUCgACCGUGcucuggaugGCGGCCAGGGCg -3'
miRNA:   3'- gUGGu--AG-UGGCACa--------UGCCGGUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 101017 0.71 0.651181
Target:  5'- -uCCAgcgCGCCuGUGaacGCGGCCGGcAGCCg -3'
miRNA:   3'- guGGUa--GUGG-CACa--UGCCGGUC-UCGG- -5'
23820 3' -55.9 NC_005261.1 + 134024 0.71 0.640917
Target:  5'- aCGCCGcCGCCGcGcucGCGGCCAuGGCCg -3'
miRNA:   3'- -GUGGUaGUGGCaCa--UGCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 44876 0.71 0.640917
Target:  5'- cCGCCGcgagCGCCGcGgggAUGGCCGGGGCg -3'
miRNA:   3'- -GUGGUa---GUGGCaCa--UGCCGGUCUCGg -5'
23820 3' -55.9 NC_005261.1 + 87905 0.71 0.627564
Target:  5'- gGCCGggcgUACCGUGUgucugccgccacccGgGGCCuGGAGCCg -3'
miRNA:   3'- gUGGUa---GUGGCACA--------------UgCCGG-UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 85789 0.71 0.620376
Target:  5'- aCGCCGUCGCUGggcagACGGCCGucGAGUa -3'
miRNA:   3'- -GUGGUAGUGGCaca--UGCCGGU--CUCGg -5'
23820 3' -55.9 NC_005261.1 + 12622 0.71 0.620376
Target:  5'- cCGCCAcCACgGUGUaguccggcGCGGUCuGGGGCCg -3'
miRNA:   3'- -GUGGUaGUGgCACA--------UGCCGG-UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 64323 0.71 0.620376
Target:  5'- gGCCGUaGCCGUGccCGcGUCAGGGCCc -3'
miRNA:   3'- gUGGUAgUGGCACauGC-CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 46399 0.72 0.610115
Target:  5'- -cCCGUCGCCGacgGUgGCGucCCAGAGCCa -3'
miRNA:   3'- guGGUAGUGGCa--CA-UGCc-GGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 75307 0.72 0.610115
Target:  5'- gCACCGcgcCACCGUcgGCGGCgcgCGGAGCCc -3'
miRNA:   3'- -GUGGUa--GUGGCAcaUGCCG---GUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 100184 0.72 0.59987
Target:  5'- aCGCCGUggcggcggggCAgCGUG-GCGGCCAGcAGCCc -3'
miRNA:   3'- -GUGGUA----------GUgGCACaUGCCGGUC-UCGG- -5'
23820 3' -55.9 NC_005261.1 + 37918 0.72 0.579461
Target:  5'- gCGCCAcCGCUGcgcgaGUACGagcGCCGGAGCCg -3'
miRNA:   3'- -GUGGUaGUGGCa----CAUGC---CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 31034 0.72 0.578444
Target:  5'- aGCCGgcgCGCCGccggGUccccagcGCGGCgGGAGCCg -3'
miRNA:   3'- gUGGUa--GUGGCa---CA-------UGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 123903 0.72 0.559203
Target:  5'- gGCCGcCGCUGUgggGUGCGGCCcGAGCa -3'
miRNA:   3'- gUGGUaGUGGCA---CAUGCCGGuCUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.