miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 3' -66.7 NC_005261.1 + 39396 0.66 0.406954
Target:  5'- cCUGGCG-GCGA-CCCGa-GCCCCaGCg -3'
miRNA:   3'- -GACCGCaCGCUcGGGCcgCGGGG-CGa -5'
23821 3' -66.7 NC_005261.1 + 31761 0.66 0.406954
Target:  5'- -aGGCGcacguguaccUGCGcGCCgCGGUGCugCCCGCg -3'
miRNA:   3'- gaCCGC----------ACGCuCGG-GCCGCG--GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 62557 0.66 0.406954
Target:  5'- -aGGCGccgccagcaUGCGc-CCCGGCGCCaCGCg -3'
miRNA:   3'- gaCCGC---------ACGCucGGGCCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 90026 0.66 0.406954
Target:  5'- cCUGGCccgggaGCGGggcuuccugcuGCCggacagccagCGGCGCCCCGCg -3'
miRNA:   3'- -GACCGca----CGCU-----------CGG----------GCCGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 29298 0.66 0.406954
Target:  5'- -cGGCGagGCcuGGCCCGGCagcgcGCCgCCGCc -3'
miRNA:   3'- gaCCGCa-CGc-UCGGGCCG-----CGG-GGCGa -5'
23821 3' -66.7 NC_005261.1 + 40052 0.66 0.406954
Target:  5'- gUGGCGa-CGGGCCCGuGCuggagcacgaggGuCCCCGCUg -3'
miRNA:   3'- gACCGCacGCUCGGGC-CG------------C-GGGGCGA- -5'
23821 3' -66.7 NC_005261.1 + 86979 0.66 0.406954
Target:  5'- -cGGCG-GC-AGCaCGGCGCCCuCGUg -3'
miRNA:   3'- gaCCGCaCGcUCGgGCCGCGGG-GCGa -5'
23821 3' -66.7 NC_005261.1 + 125294 0.66 0.406954
Target:  5'- -aGGCc-GCGGGCgCCggacccgcgGGCGCUCCGCg -3'
miRNA:   3'- gaCCGcaCGCUCG-GG---------CCGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 51402 0.66 0.406954
Target:  5'- --cGCGaGCgGAGCCCGcGCGCCcaCCGCc -3'
miRNA:   3'- gacCGCaCG-CUCGGGC-CGCGG--GGCGa -5'
23821 3' -66.7 NC_005261.1 + 15785 0.66 0.406954
Target:  5'- gCUGGCGgGCGccGCCCGcGCGgCCaGCg -3'
miRNA:   3'- -GACCGCaCGCu-CGGGC-CGCgGGgCGa -5'
23821 3' -66.7 NC_005261.1 + 32501 0.66 0.404524
Target:  5'- -cGGCGgcaucgGCGGgggguccgcgccgcGCCCGGCcccgGCCCCGg- -3'
miRNA:   3'- gaCCGCa-----CGCU--------------CGGGCCG----CGGGGCga -5'
23821 3' -66.7 NC_005261.1 + 17547 0.66 0.398887
Target:  5'- -gGGCGgcGCGGGCCCGcCGUUCgGCg -3'
miRNA:   3'- gaCCGCa-CGCUCGGGCcGCGGGgCGa -5'
23821 3' -66.7 NC_005261.1 + 4797 0.66 0.398887
Target:  5'- -cGGCcu-CGGGCCCGGCGUcaacuuccUCCGCg -3'
miRNA:   3'- gaCCGcacGCUCGGGCCGCG--------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 16882 0.66 0.398887
Target:  5'- aUGuaGUacaGCG-GCCgGGCGCaCCCGCUc -3'
miRNA:   3'- gACcgCA---CGCuCGGgCCGCG-GGGCGA- -5'
23821 3' -66.7 NC_005261.1 + 81508 0.66 0.398887
Target:  5'- -cGGCGcGCGcGCcgccgCCGGCGCCaggCGCUg -3'
miRNA:   3'- gaCCGCaCGCuCG-----GGCCGCGGg--GCGA- -5'
23821 3' -66.7 NC_005261.1 + 57932 0.66 0.398887
Target:  5'- -cGcGCGUGCu-GCCCGGCaccaGCgCCCGUg -3'
miRNA:   3'- gaC-CGCACGcuCGGGCCG----CG-GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 104827 0.66 0.398887
Target:  5'- -cGGCGUcGCGGGgCC-GCGCCaCGCg -3'
miRNA:   3'- gaCCGCA-CGCUCgGGcCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 11951 0.66 0.398887
Target:  5'- -cGGCG-GCucGCCCGGCGCg-CGCUc -3'
miRNA:   3'- gaCCGCaCGcuCGGGCCGCGggGCGA- -5'
23821 3' -66.7 NC_005261.1 + 50834 0.66 0.398887
Target:  5'- uUGGCGccGCGAG-CUGGCGCCUgugGCUc -3'
miRNA:   3'- gACCGCa-CGCUCgGGCCGCGGGg--CGA- -5'
23821 3' -66.7 NC_005261.1 + 60842 0.66 0.398887
Target:  5'- -cGGCGgcgGCGAGgUCGcGCGCcgggccgagCCCGCg -3'
miRNA:   3'- gaCCGCa--CGCUCgGGC-CGCG---------GGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.