miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 5' -55.3 NC_005261.1 + 97844 0.67 0.85073
Target:  5'- gGGGCGGcGGgcgccgccGCGGCAGCGCGg -3'
miRNA:   3'- aCUCGCU-CCacaacu--CGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 13593 0.67 0.840892
Target:  5'- aGAGCGugaaggagucgcccgGGGUGUacacgUGGG-AGCGGUACGg -3'
miRNA:   3'- aCUCGC---------------UCCACA-----ACUCgUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 33803 0.67 0.837549
Target:  5'- cGGGCGGcGGgcuUGUcuuUGGGCGGCcggggGGCGCGg -3'
miRNA:   3'- aCUCGCU-CC---ACA---ACUCGUCG-----UCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 97054 0.67 0.837549
Target:  5'- aGGGCGGGG-----GGCGGCgGGCACGa -3'
miRNA:   3'- aCUCGCUCCacaacUCGUCG-UCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 131852 0.67 0.836708
Target:  5'- --uGCGGGGUGUccaagcggcugcuUGAGCuGGCGGC-CGc -3'
miRNA:   3'- acuCGCUCCACA-------------ACUCG-UCGUCGuGC- -5'
23821 5' -55.3 NC_005261.1 + 51876 0.67 0.829054
Target:  5'- gUGAGCGccGcGcgGcAGCAGCGGCGCGc -3'
miRNA:   3'- -ACUCGCucCaCaaC-UCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 97959 0.67 0.829054
Target:  5'- cGAGgGAGGUGgcggcgGAGCGGU-GCcCGg -3'
miRNA:   3'- aCUCgCUCCACaa----CUCGUCGuCGuGC- -5'
23821 5' -55.3 NC_005261.1 + 92732 0.67 0.829054
Target:  5'- gGAGCGGGGcGggGA-CAGCgAGCGCc -3'
miRNA:   3'- aCUCGCUCCaCaaCUcGUCG-UCGUGc -5'
23821 5' -55.3 NC_005261.1 + 32912 0.68 0.820373
Target:  5'- gGGGCGcGcGUGggGGGCGGCGG-GCGg -3'
miRNA:   3'- aCUCGCuC-CACaaCUCGUCGUCgUGC- -5'
23821 5' -55.3 NC_005261.1 + 83389 0.68 0.820373
Target:  5'- cGAGCGcGGccucggccgaGgcGAGCAGguGCGCGa -3'
miRNA:   3'- aCUCGCuCCa---------CaaCUCGUCguCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 2090 0.68 0.811512
Target:  5'- -aGGCcAGGUcccgcGUcgcGAGCAGCAGCACGc -3'
miRNA:   3'- acUCGcUCCA-----CAa--CUCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 98115 0.68 0.811512
Target:  5'- -cGGCGAGGcUGggGAcGCcGCGGCACc -3'
miRNA:   3'- acUCGCUCC-ACaaCU-CGuCGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 121769 0.68 0.811512
Target:  5'- cGAGCGcGGUGggGuGGCcGCGGCcgGCGg -3'
miRNA:   3'- aCUCGCuCCACaaC-UCGuCGUCG--UGC- -5'
23821 5' -55.3 NC_005261.1 + 136403 0.68 0.802482
Target:  5'- gGGGCGGacguGGUGUcgGAGCcGCAGuCGCa -3'
miRNA:   3'- aCUCGCU----CCACAa-CUCGuCGUC-GUGc -5'
23821 5' -55.3 NC_005261.1 + 13294 0.68 0.802482
Target:  5'- gGGGCGcAGGUGUgcgacggGGGCcucguacGCAGCGCc -3'
miRNA:   3'- aCUCGC-UCCACAa------CUCGu------CGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 75445 0.68 0.783946
Target:  5'- cGAGCGccucccacGGGgccaGUUccaggcgccGGGCGGCGGCGCGg -3'
miRNA:   3'- aCUCGC--------UCCa---CAA---------CUCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 101138 0.69 0.764841
Target:  5'- cGcGCGAGGcUGccGcGCGGCGGCGCGc -3'
miRNA:   3'- aCuCGCUCC-ACaaCuCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 98920 0.69 0.764841
Target:  5'- -cGGCGGGGUcGgcugcGGGgGGCAGCGCGu -3'
miRNA:   3'- acUCGCUCCA-Caa---CUCgUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 1006 0.69 0.764841
Target:  5'- gGGGCGGGGggcGggGGGCGGguGgGCu -3'
miRNA:   3'- aCUCGCUCCa--CaaCUCGUCguCgUGc -5'
23821 5' -55.3 NC_005261.1 + 98165 0.69 0.755098
Target:  5'- cGGGCGgcGGGUGUguccuugGAGCcgccGGgGGCGCGg -3'
miRNA:   3'- aCUCGC--UCCACAa------CUCG----UCgUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.