miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23822 3' -58.2 NC_005261.1 + 125769 0.66 0.784281
Target:  5'- cGCGGgcUCG-GCU-AAGGCCAaGGCCGc -3'
miRNA:   3'- -CGCCa-AGUgCGAcUUCCGGU-CCGGCa -5'
23822 3' -58.2 NC_005261.1 + 18937 0.66 0.775068
Target:  5'- -aGGc-CGCGCUGAAGGCgGGGUg-- -3'
miRNA:   3'- cgCCaaGUGCGACUUCCGgUCCGgca -5'
23822 3' -58.2 NC_005261.1 + 58867 0.66 0.775068
Target:  5'- aGUGGaa-GCGCUGGggAGGuCCGGGCgGg -3'
miRNA:   3'- -CGCCaagUGCGACU--UCC-GGUCCGgCa -5'
23822 3' -58.2 NC_005261.1 + 135351 0.66 0.775068
Target:  5'- aGCGGUUCGCcCccGAGGGCC--GCCGc -3'
miRNA:   3'- -CGCCAAGUGcGa-CUUCCGGucCGGCa -5'
23822 3' -58.2 NC_005261.1 + 97180 0.66 0.775068
Target:  5'- cGCGG---GCGCcGGccGGGCCGcGGCCGg -3'
miRNA:   3'- -CGCCaagUGCGaCU--UCCGGU-CCGGCa -5'
23822 3' -58.2 NC_005261.1 + 110529 0.66 0.774139
Target:  5'- uGCGGg--GCGCaGGAGGgcgcgcgcacggaCCAGGCCGc -3'
miRNA:   3'- -CGCCaagUGCGaCUUCC-------------GGUCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 104324 0.67 0.765727
Target:  5'- cGCGGacgCGCGCguccagcGGCC-GGCCGUc -3'
miRNA:   3'- -CGCCaa-GUGCGacuu---CCGGuCCGGCA- -5'
23822 3' -58.2 NC_005261.1 + 137774 0.67 0.765727
Target:  5'- uGCGGggCGCGCccccGGGCCccGCCGc -3'
miRNA:   3'- -CGCCaaGUGCGacu-UCCGGucCGGCa -5'
23822 3' -58.2 NC_005261.1 + 97213 0.67 0.765727
Target:  5'- cGCGGc-CACGCUcGGAggcgcuggcgccGGCCcGGCCGg -3'
miRNA:   3'- -CGCCaaGUGCGA-CUU------------CCGGuCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 97135 0.67 0.765727
Target:  5'- cGCGGc-CACGCUcGGAggcgcuggcgccGGCCcGGCCGg -3'
miRNA:   3'- -CGCCaaGUGCGA-CUU------------CCGGuCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 58788 0.67 0.765727
Target:  5'- cCGGccagCGCGCgcagGAAGGCCGGcacgcGCCGc -3'
miRNA:   3'- cGCCaa--GUGCGa---CUUCCGGUC-----CGGCa -5'
23822 3' -58.2 NC_005261.1 + 91 0.67 0.765727
Target:  5'- uGCGGggCGCGCccccGGGCCccGCCGc -3'
miRNA:   3'- -CGCCaaGUGCGacu-UCCGGucCGGCa -5'
23822 3' -58.2 NC_005261.1 + 68094 0.67 0.764787
Target:  5'- gGCGGggaggccgugaagUUCGgGCUGGAGcuGCgCGGGCCGc -3'
miRNA:   3'- -CGCC-------------AAGUgCGACUUC--CG-GUCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 1841 0.67 0.75627
Target:  5'- uCGGcgCGCGC-GAAGgcGCCGGGCCc- -3'
miRNA:   3'- cGCCaaGUGCGaCUUC--CGGUCCGGca -5'
23822 3' -58.2 NC_005261.1 + 19167 0.67 0.75627
Target:  5'- gGCGGaUCACGC-GAAGcagcuGCCGGGCg-- -3'
miRNA:   3'- -CGCCaAGUGCGaCUUC-----CGGUCCGgca -5'
23822 3' -58.2 NC_005261.1 + 125036 0.67 0.746704
Target:  5'- cCGGUgggGCGCUGAcucGGGCaGGGCCu- -3'
miRNA:   3'- cGCCAag-UGCGACU---UCCGgUCCGGca -5'
23822 3' -58.2 NC_005261.1 + 24926 0.67 0.746704
Target:  5'- gGCGGcugCAgcCGCcGAGGGgCAGGCUGg -3'
miRNA:   3'- -CGCCaa-GU--GCGaCUUCCgGUCCGGCa -5'
23822 3' -58.2 NC_005261.1 + 84134 0.67 0.746704
Target:  5'- gGCGGggu-CGCUGGcGGGCCucGGCCa- -3'
miRNA:   3'- -CGCCaaguGCGACU-UCCGGu-CCGGca -5'
23822 3' -58.2 NC_005261.1 + 38520 0.67 0.746704
Target:  5'- -aGGcgCGCGCUGGcugcgcgcgccGGGCaCAGcGCCGg -3'
miRNA:   3'- cgCCaaGUGCGACU-----------UCCG-GUC-CGGCa -5'
23822 3' -58.2 NC_005261.1 + 129371 0.67 0.746704
Target:  5'- cGCGGgUCGCGCggcuucGGGuccaCCGGGCUGUg -3'
miRNA:   3'- -CGCCaAGUGCGacu---UCC----GGUCCGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.