miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23822 5' -59.9 NC_005261.1 + 24288 0.72 0.358882
Target:  5'- gGUGGGGGUgggGGgCCAGGAUGAGgGu -3'
miRNA:   3'- -CAUCCCCAggaCCgGGUCCUACUCgU- -5'
23822 5' -59.9 NC_005261.1 + 15932 0.69 0.499261
Target:  5'- --cGGGG-CCggGGCCCGGGcagGAGCc -3'
miRNA:   3'- cauCCCCaGGa-CCGGGUCCua-CUCGu -5'
23822 5' -59.9 NC_005261.1 + 46047 0.69 0.499261
Target:  5'- gGUAGaGGGUCCagGGCagCGGGAaGGGCGc -3'
miRNA:   3'- -CAUC-CCCAGGa-CCGg-GUCCUaCUCGU- -5'
23822 5' -59.9 NC_005261.1 + 29119 0.67 0.598192
Target:  5'- -gAGGGGagcCCUGGCgCCGGG--GGGCGc -3'
miRNA:   3'- caUCCCCa--GGACCG-GGUCCuaCUCGU- -5'
23822 5' -59.9 NC_005261.1 + 16170 0.67 0.628637
Target:  5'- aGUAGGGGgcgcgggCgUGG-CgGGGGUGGGCGg -3'
miRNA:   3'- -CAUCCCCa------GgACCgGgUCCUACUCGU- -5'
23822 5' -59.9 NC_005261.1 + 121194 0.67 0.628637
Target:  5'- --cGGGG-CCgGGCCCGGGGccgcGGGCc -3'
miRNA:   3'- cauCCCCaGGaCCGGGUCCUa---CUCGu -5'
23822 5' -59.9 NC_005261.1 + 1069 0.67 0.64896
Target:  5'- -cGGGGGg-CUGGCCCcgcuccAGGgcGAGCc -3'
miRNA:   3'- caUCCCCagGACCGGG------UCCuaCUCGu -5'
23822 5' -59.9 NC_005261.1 + 48311 0.66 0.679323
Target:  5'- -cGGGGGgcgcgUCgGGCCCGGGcucggGGGCGc -3'
miRNA:   3'- caUCCCCa----GGaCCGGGUCCua---CUCGU- -5'
23822 5' -59.9 NC_005261.1 + 25997 0.66 0.689379
Target:  5'- -gAGGGGUgg-GGcCCCGGGAgagagaGAGCAa -3'
miRNA:   3'- caUCCCCAggaCC-GGGUCCUa-----CUCGU- -5'
23822 5' -59.9 NC_005261.1 + 40231 0.66 0.699389
Target:  5'- --cGucGUCuCUGGCCCGGGGgccgUGAGCGc -3'
miRNA:   3'- cauCccCAG-GACCGGGUCCU----ACUCGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.