miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 3' -56.1 NC_005261.1 + 28799 0.66 0.883095
Target:  5'- gCGgCCGCGGcgGAGGcaGCCgccGCCGa -3'
miRNA:   3'- gGCgGGCGCCuaUUUCuaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 9901 0.66 0.878842
Target:  5'- cCCGCCCGgGGc--AAGcccgccccagccgGCCUGCCc -3'
miRNA:   3'- -GGCGGGCgCCuauUUCua-----------CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 9844 0.66 0.878842
Target:  5'- cCCGCCCGgGGc--AAGcccgccccagccgGCCUGCCc -3'
miRNA:   3'- -GGCGGGCgCCuauUUCua-----------CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 65424 0.66 0.875962
Target:  5'- aCGUCCGCGGGccccagGAAGAaGUCaaagGCCGg -3'
miRNA:   3'- gGCGGGCGCCUa-----UUUCUaCGGa---CGGU- -5'
23823 3' -56.1 NC_005261.1 + 2407 0.66 0.875962
Target:  5'- gCGCCCGCGGGccccgcgcGGcgGCggGCCGc -3'
miRNA:   3'- gGCGGGCGCCUauu-----UCuaCGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 53597 0.66 0.875962
Target:  5'- gCGCCCcaGCGGAccGAcGAgGCCgugGCCAg -3'
miRNA:   3'- gGCGGG--CGCCUauUU-CUaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 33988 0.66 0.875962
Target:  5'- gCCGCCC-CGGAgcuGGGcuCCUGCUg -3'
miRNA:   3'- -GGCGGGcGCCUauuUCUacGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 102983 0.66 0.875962
Target:  5'- gCCGCCgCGCGcGAcacGGcgGCC-GCCAc -3'
miRNA:   3'- -GGCGG-GCGC-CUauuUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 92234 0.66 0.875962
Target:  5'- cCCGCCgagcgCGCGGAUGGAG--GCCaggaagGCCc -3'
miRNA:   3'- -GGCGG-----GCGCCUAUUUCuaCGGa-----CGGu -5'
23823 3' -56.1 NC_005261.1 + 101083 0.66 0.875962
Target:  5'- aCGCCCGCGGcc------GCCUGCa- -3'
miRNA:   3'- gGCGGGCGCCuauuucuaCGGACGgu -5'
23823 3' -56.1 NC_005261.1 + 98481 0.66 0.875237
Target:  5'- gCCGUCCuccgcgggcucggGCGGGU-AAGGUGCCgGCg- -3'
miRNA:   3'- -GGCGGG-------------CGCCUAuUUCUACGGaCGgu -5'
23823 3' -56.1 NC_005261.1 + 130795 0.66 0.873779
Target:  5'- gCCGCaCCGCGGAcGacgcccaauacgucGAGG-GCCagGCCAc -3'
miRNA:   3'- -GGCG-GGCGCCUaU--------------UUCUaCGGa-CGGU- -5'
23823 3' -56.1 NC_005261.1 + 120963 0.66 0.868609
Target:  5'- gCGcCCCGCGGGgcgc-GUGCC-GCCGc -3'
miRNA:   3'- gGC-GGGCGCCUauuucUACGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 119699 0.66 0.868609
Target:  5'- cCCGCUccacgCGCGGcgAUGAGGAggGCgUGCCc -3'
miRNA:   3'- -GGCGG-----GCGCC--UAUUUCUa-CGgACGGu -5'
23823 3' -56.1 NC_005261.1 + 72454 0.66 0.868609
Target:  5'- gCGCCCGCGGcgAgcGcgGCgaGCgCGa -3'
miRNA:   3'- gGCGGGCGCCuaUuuCuaCGgaCG-GU- -5'
23823 3' -56.1 NC_005261.1 + 30384 0.66 0.868609
Target:  5'- gCCGCggCGCGGGUGGAGGuggaggacaUGCggGCCGg -3'
miRNA:   3'- -GGCGg-GCGCCUAUUUCU---------ACGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 99686 0.67 0.86104
Target:  5'- gCUGCCCG-GGAUGAGGcgcGCCagcuccGCCAc -3'
miRNA:   3'- -GGCGGGCgCCUAUUUCua-CGGa-----CGGU- -5'
23823 3' -56.1 NC_005261.1 + 97113 0.67 0.86104
Target:  5'- gCCgGgCCGCGGccGGAGgcGCCgcgGCCAc -3'
miRNA:   3'- -GG-CgGGCGCCuaUUUCuaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 93419 0.67 0.86104
Target:  5'- gCGCCCGCGccccgcGAUGugcuuGAGG-GCCgugGCCAg -3'
miRNA:   3'- gGCGGGCGC------CUAU-----UUCUaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 18276 0.67 0.86104
Target:  5'- gCUGCCCGCGu----AGAUGUCguugggGCCGu -3'
miRNA:   3'- -GGCGGGCGCcuauuUCUACGGa-----CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.