miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 5' -62.6 NC_005261.1 + 64529 0.73 0.252587
Target:  5'- cCUCGU-CGGGGGGCaGGUCCGgGAcCAc -3'
miRNA:   3'- -GAGCAcGCCCCCCG-CUAGGCgCUcGU- -5'
23823 5' -62.6 NC_005261.1 + 12774 0.74 0.209523
Target:  5'- -gCGgugGCGGGGGGCucGUCgGCGAGCu -3'
miRNA:   3'- gaGCa--CGCCCCCCGc-UAGgCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 90225 0.74 0.199795
Target:  5'- cCUCGcgcgGCGGGcGGGCGcgCCGuCGGGUAu -3'
miRNA:   3'- -GAGCa---CGCCC-CCCGCuaGGC-GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 134364 0.75 0.181515
Target:  5'- -cCGcGCGGGGGGCGGcgCCGCuGGCGa -3'
miRNA:   3'- gaGCaCGCCCCCCGCUa-GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 20281 0.69 0.424635
Target:  5'- gUCGUGuCGcGGGGGCGcgCUuGCG-GCAg -3'
miRNA:   3'- gAGCAC-GC-CCCCCGCuaGG-CGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 100405 0.69 0.424635
Target:  5'- gUUGUccaGCGGGGGGCGcAUCgaggcgcccgccUGCGAGUAc -3'
miRNA:   3'- gAGCA---CGCCCCCCGC-UAG------------GCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 2486 0.67 0.514225
Target:  5'- gCUCGggGaaGaGcGGGUGGUCCGCGAGCc -3'
miRNA:   3'- -GAGCa-CgcC-C-CCCGCUAGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 22742 0.68 0.504891
Target:  5'- gUCGggcGCGGGGcGGCGGcggcccacgcgUCUGgGGGCGg -3'
miRNA:   3'- gAGCa--CGCCCC-CCGCU-----------AGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 44268 0.68 0.504891
Target:  5'- -gCGcGCgGGGGGGCGGggcccgCCGCcAGCGg -3'
miRNA:   3'- gaGCaCG-CCCCCCGCUa-----GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 73218 0.68 0.495631
Target:  5'- cCUCGa--GGGGcGCGGUggCCGCGAGCGc -3'
miRNA:   3'- -GAGCacgCCCCcCGCUA--GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 88138 0.68 0.486449
Target:  5'- cCUCGcgccGCGcGGGGGCGccccggCCGCGcAGCc -3'
miRNA:   3'- -GAGCa---CGC-CCCCCGCua----GGCGC-UCGu -5'
23823 5' -62.6 NC_005261.1 + 46006 0.68 0.486449
Target:  5'- -gUGUGCGcGGcaGGCGAugUCCGgGAGCAg -3'
miRNA:   3'- gaGCACGC-CCc-CCGCU--AGGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 74283 0.68 0.477348
Target:  5'- -gCG-GCGGgcGGGGCGGUcgCCGcCGGGCAg -3'
miRNA:   3'- gaGCaCGCC--CCCCGCUA--GGC-GCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 39786 0.68 0.477348
Target:  5'- -aCGUcGcCGGGGGGCGGcgcggCCGCcGGCGc -3'
miRNA:   3'- gaGCA-C-GCCCCCCGCUa----GGCGcUCGU- -5'
23823 5' -62.6 NC_005261.1 + 94863 0.68 0.476443
Target:  5'- gCUCGcGCacggcccGGGcGGGCGGcCCGCGuGCAg -3'
miRNA:   3'- -GAGCaCG-------CCC-CCCGCUaGGCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 128069 0.68 0.468333
Target:  5'- -aUG-GCGGGcGGGCGggCgaGCGAGCGg -3'
miRNA:   3'- gaGCaCGCCC-CCCGCuaGg-CGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 49120 0.68 0.468333
Target:  5'- cCUCGaGCGcGGcGGGCGGgacccCCGCGcGCAg -3'
miRNA:   3'- -GAGCaCGC-CC-CCCGCUa----GGCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 127743 0.69 0.450569
Target:  5'- gCUUG-GCGGcGGGaGCGggCCGCG-GCGg -3'
miRNA:   3'- -GAGCaCGCC-CCC-CGCuaGGCGCuCGU- -5'
23823 5' -62.6 NC_005261.1 + 98050 0.69 0.433181
Target:  5'- -gCGgccGCGGGcGGCGGgaCCGCGGGCGg -3'
miRNA:   3'- gaGCa--CGCCCcCCGCUa-GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 24390 0.77 0.142166
Target:  5'- gCUCGUcgGCGGcGGGGCGGUCCuGgGGGCu -3'
miRNA:   3'- -GAGCA--CGCC-CCCCGCUAGG-CgCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.