Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23825 | 3' | -64.1 | NC_005261.1 | + | 55758 | 0.66 | 0.552127 |
Target: 5'- gCCUCgACGCGCGCCgCCgcccggaucugCCCcCCCa- -3' miRNA: 3'- -GGGG-UGCGCGCGG-GGaa---------GGGaGGGcu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 29310 | 0.66 | 0.544593 |
Target: 5'- gCCCgGCaGCGCGCCgCCg--CCgCCCGGc -3' miRNA: 3'- -GGGgUG-CGCGCGG-GGaagGGaGGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 60398 | 0.66 | 0.544593 |
Target: 5'- cCUCCAUG-GCGCCgggCCggCCCgggCCCGGg -3' miRNA: 3'- -GGGGUGCgCGCGG---GGaaGGGa--GGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 36872 | 0.66 | 0.544593 |
Target: 5'- gCCCCGCaCGCuGgCCCgcgCCCUUCCu- -3' miRNA: 3'- -GGGGUGcGCG-CgGGGaa-GGGAGGGcu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 91880 | 0.66 | 0.544593 |
Target: 5'- gUCCguCGCGCucuguugucuGCCCCcgCCCccgUCCCGGc -3' miRNA: 3'- -GGGguGCGCG----------CGGGGaaGGG---AGGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 28431 | 0.66 | 0.544593 |
Target: 5'- aCCCGCGCGCaCCgCggCCggccauggcguCUCCCGGc -3' miRNA: 3'- gGGGUGCGCGcGGgGaaGG-----------GAGGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 11539 | 0.66 | 0.538964 |
Target: 5'- aCCCCGCGUugggcgaaaaaaGaaggggguucugccaUGCCCCUUCCCcCCCc- -3' miRNA: 3'- -GGGGUGCG------------C---------------GCGGGGAAGGGaGGGcu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 64138 | 0.66 | 0.535223 |
Target: 5'- gCCgCCA-GCGCGUCCUggCCCagCCCGc -3' miRNA: 3'- -GG-GGUgCGCGCGGGGaaGGGa-GGGCu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 57365 | 0.66 | 0.535223 |
Target: 5'- uCCCCGCGCG-GCCCgacgCCCgccagcagCUCGGg -3' miRNA: 3'- -GGGGUGCGCgCGGGgaa-GGGa-------GGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 107874 | 0.66 | 0.535223 |
Target: 5'- gCCCGCGCgcucGCGCCCgCggCCCgcuugUCCGc -3' miRNA: 3'- gGGGUGCG----CGCGGG-GaaGGGa----GGGCu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 4943 | 0.66 | 0.535223 |
Target: 5'- gCCCGCGcCGCGgCCCaggCgCC-CCCGGc -3' miRNA: 3'- gGGGUGC-GCGCgGGGaa-G-GGaGGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 134709 | 0.66 | 0.52591 |
Target: 5'- -aCCGCgGCGCGCCCagaCCCggCCGGg -3' miRNA: 3'- ggGGUG-CGCGCGGGgaaGGGagGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 59513 | 0.66 | 0.52591 |
Target: 5'- gUCgCACGCGCGCCCUggagcagCCC-CgCCGc -3' miRNA: 3'- -GGgGUGCGCGCGGGGaa-----GGGaG-GGCu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 35395 | 0.67 | 0.516659 |
Target: 5'- cCCCCGCcccCGCGCCCa---UCUCCaCGAu -3' miRNA: 3'- -GGGGUGc--GCGCGGGgaagGGAGG-GCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 3303 | 0.67 | 0.516659 |
Target: 5'- gCCCGCG-GUGCCCCggCCCgcaugUCCu- -3' miRNA: 3'- gGGGUGCgCGCGGGGaaGGGa----GGGcu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 128849 | 0.67 | 0.516659 |
Target: 5'- gCCgCCACG-GUGCCCCgccucgUCgCUgCCGAc -3' miRNA: 3'- -GG-GGUGCgCGCGGGGa-----AGgGAgGGCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 36751 | 0.67 | 0.516659 |
Target: 5'- aCCCAgGCcagcugGCGCCCCUgcacgCCggCCCGu -3' miRNA: 3'- gGGGUgCG------CGCGGGGAa----GGgaGGGCu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 133748 | 0.67 | 0.516659 |
Target: 5'- aCgCCACGCGCgcgaucgacGCCCCgUgCCUCCaCGc -3' miRNA: 3'- -GgGGUGCGCG---------CGGGGaAgGGAGG-GCu -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 1162 | 0.67 | 0.516659 |
Target: 5'- uUCCACGCGCGCCgg--CCCgcgCCgCGGc -3' miRNA: 3'- gGGGUGCGCGCGGggaaGGGa--GG-GCU- -5' |
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23825 | 3' | -64.1 | NC_005261.1 | + | 92830 | 0.67 | 0.507474 |
Target: 5'- -aCCGCGCGCagaguccaGCUCCagcUCCCgggCCCGGc -3' miRNA: 3'- ggGGUGCGCG--------CGGGGa--AGGGa--GGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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