miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23825 5' -51.8 NC_005261.1 + 32753 0.66 0.980609
Target:  5'- gGCCCgCCGcucuacgggcucggAGGGAGGA-GAGGGAGGc -3'
miRNA:   3'- -UGGGgGGU--------------UUUUUCCUgCUCCUUCUu -5'
23825 5' -51.8 NC_005261.1 + 78406 0.66 0.97993
Target:  5'- uUCCUCCGugcucugugggcgauGGGGGGGGCGAugGGGAGAAg -3'
miRNA:   3'- uGGGGGGU---------------UUUUUCCUGCU--CCUUCUU- -5'
23825 5' -51.8 NC_005261.1 + 94678 0.66 0.978998
Target:  5'- uCCCCCUGAGGcgcuggccaccGAGGACGuGGccGAGc -3'
miRNA:   3'- uGGGGGGUUUU-----------UUCCUGCuCCuuCUU- -5'
23825 5' -51.8 NC_005261.1 + 57993 0.66 0.973852
Target:  5'- cGCgCCgCCAAAAAgcgccAGGACGuGGAAGu- -3'
miRNA:   3'- -UGgGG-GGUUUUU-----UCCUGCuCCUUCuu -5'
23825 5' -51.8 NC_005261.1 + 137113 0.66 0.970961
Target:  5'- gACCCgCgCGGcggcguuuuguGGAAGGAgCGAGGGAGGAg -3'
miRNA:   3'- -UGGGgG-GUU-----------UUUUCCU-GCUCCUUCUU- -5'
23825 5' -51.8 NC_005261.1 + 30538 0.66 0.970961
Target:  5'- ------aGGAGGAGGACGAGGAAGAGg -3'
miRNA:   3'- uggggggUUUUUUCCUGCUCCUUCUU- -5'
23825 5' -51.8 NC_005261.1 + 33841 0.67 0.960924
Target:  5'- gGCCCCCUGGcgcuGGGCGggccGGGAGGGc -3'
miRNA:   3'- -UGGGGGGUUuuuuCCUGC----UCCUUCUu -5'
23825 5' -51.8 NC_005261.1 + 9460 0.67 0.960924
Target:  5'- cCUCCCCGcAGAGGGGgGAGGGGc-- -3'
miRNA:   3'- uGGGGGGUuUUUUCCUgCUCCUUcuu -5'
23825 5' -51.8 NC_005261.1 + 116625 0.67 0.953033
Target:  5'- cGCCCgCCCGccGAcGAGGGCGAGGc---- -3'
miRNA:   3'- -UGGG-GGGU--UUuUUCCUGCUCCuucuu -5'
23825 5' -51.8 NC_005261.1 + 62891 0.67 0.948712
Target:  5'- aGCCCgCgCGAGGcGGGGCGGGGcGGAc -3'
miRNA:   3'- -UGGGgG-GUUUUuUCCUGCUCCuUCUu -5'
23825 5' -51.8 NC_005261.1 + 74442 0.67 0.948712
Target:  5'- cGCCCCCCcggcGGGGGGugGGGGc---- -3'
miRNA:   3'- -UGGGGGGuu--UUUUCCugCUCCuucuu -5'
23825 5' -51.8 NC_005261.1 + 30566 0.69 0.91118
Target:  5'- cGCCggggCCUCGGAcgGGGACGGGGAcgGGGAc -3'
miRNA:   3'- -UGG----GGGGUUUuuUCCUGCUCCU--UCUU- -5'
23825 5' -51.8 NC_005261.1 + 33003 0.69 0.91118
Target:  5'- gGCCgaCCgGGGAAGGGGgGAGGggGGc -3'
miRNA:   3'- -UGGg-GGgUUUUUUCCUgCUCCuuCUu -5'
23825 5' -51.8 NC_005261.1 + 115048 0.69 0.91118
Target:  5'- cACCCUggCGAAGGGGGGCGGGGuGGGGa -3'
miRNA:   3'- -UGGGGg-GUUUUUUCCUGCUCCuUCUU- -5'
23825 5' -51.8 NC_005261.1 + 43823 0.69 0.89118
Target:  5'- cGCCCUCCGugGAGAAGcugcucGGCGAGGgcGAGg -3'
miRNA:   3'- -UGGGGGGU--UUUUUC------CUGCUCCuuCUU- -5'
23825 5' -51.8 NC_005261.1 + 8562 0.7 0.884007
Target:  5'- gGCCgCCCCGGGAaguGAGGACGcuGGcAGAAu -3'
miRNA:   3'- -UGG-GGGGUUUU---UUCCUGCu-CCuUCUU- -5'
23825 5' -51.8 NC_005261.1 + 30826 0.7 0.884007
Target:  5'- gGCCCggggacggggCCgaGGAGGAGGAgGAGGAGGAAg -3'
miRNA:   3'- -UGGG----------GGg-UUUUUUCCUgCUCCUUCUU- -5'
23825 5' -51.8 NC_005261.1 + 8387 0.7 0.876588
Target:  5'- cCCCCCCAAGccGGGGCuGGGAuucGAAc -3'
miRNA:   3'- uGGGGGGUUUuuUCCUGcUCCUu--CUU- -5'
23825 5' -51.8 NC_005261.1 + 121556 0.7 0.876588
Target:  5'- cGCCguCCUCGGcGAAGGGCGGGGAcGAGg -3'
miRNA:   3'- -UGG--GGGGUUuUUUCCUGCUCCUuCUU- -5'
23825 5' -51.8 NC_005261.1 + 5304 0.7 0.876588
Target:  5'- gUCCCU--GGAGAGGAgGAGGAGGGGg -3'
miRNA:   3'- uGGGGGguUUUUUCCUgCUCCUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.