Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23825 | 5' | -51.8 | NC_005261.1 | + | 33841 | 0.67 | 0.960924 |
Target: 5'- gGCCCCCUGGcgcuGGGCGggccGGGAGGGc -3' miRNA: 3'- -UGGGGGGUUuuuuCCUGC----UCCUUCUu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 35351 | 0.78 | 0.439466 |
Target: 5'- aGCCCgCCGGAGAAGGACaGAGGuAGAu -3' miRNA: 3'- -UGGGgGGUUUUUUCCUG-CUCCuUCUu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 37309 | 0.72 | 0.780719 |
Target: 5'- cGCCCCCCGcacGAGGACGcGGuccuGGAGc -3' miRNA: 3'- -UGGGGGGUuuuUUCCUGCuCCu---UCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 43823 | 0.69 | 0.89118 |
Target: 5'- cGCCCUCCGugGAGAAGcugcucGGCGAGGgcGAGg -3' miRNA: 3'- -UGGGGGGU--UUUUUC------CUGCUCCuuCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 46757 | 0.71 | 0.836017 |
Target: 5'- aGCCCgCCGAAGAAGGucaggaGCGAGGGcuuGAGc -3' miRNA: 3'- -UGGGgGGUUUUUUCC------UGCUCCUu--CUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 48016 | 0.72 | 0.799845 |
Target: 5'- cGCCCCgCCGgcAGAGcAGGGCGAGGAGc-- -3' miRNA: 3'- -UGGGG-GGU--UUUU-UCCUGCUCCUUcuu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 57993 | 0.66 | 0.973852 |
Target: 5'- cGCgCCgCCAAAAAgcgccAGGACGuGGAAGu- -3' miRNA: 3'- -UGgGG-GGUUUUU-----UCCUGCuCCUUCuu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 62891 | 0.67 | 0.948712 |
Target: 5'- aGCCCgCgCGAGGcGGGGCGGGGcGGAc -3' miRNA: 3'- -UGGGgG-GUUUUuUCCUGCUCCuUCUu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 74442 | 0.67 | 0.948712 |
Target: 5'- cGCCCCCCcggcGGGGGGugGGGGc---- -3' miRNA: 3'- -UGGGGGGuu--UUUUCCugCUCCuucuu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 74915 | 0.73 | 0.699188 |
Target: 5'- gGCCgCgCGGGGGAGGGCGAGGAcgGGGAc -3' miRNA: 3'- -UGGgGgGUUUUUUCCUGCUCCU--UCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 78406 | 0.66 | 0.97993 |
Target: 5'- uUCCUCCGugcucugugggcgauGGGGGGGGCGAugGGGAGAAg -3' miRNA: 3'- uGGGGGGU---------------UUUUUCCUGCU--CCUUCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 90125 | 0.71 | 0.827258 |
Target: 5'- gGCCCgCgGc--GAGGGCGAGGAGGGGg -3' miRNA: 3'- -UGGGgGgUuuuUUCCUGCUCCUUCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 94678 | 0.66 | 0.978998 |
Target: 5'- uCCCCCUGAGGcgcuggccaccGAGGACGuGGccGAGc -3' miRNA: 3'- uGGGGGGUUUU-----------UUCCUGCuCCuuCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 98661 | 0.76 | 0.569878 |
Target: 5'- gGCCCCCCAGGcGAGGGCGGGcuccgccggggccGGAGGc -3' miRNA: 3'- -UGGGGGGUUUuUUCCUGCUC-------------CUUCUu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 115048 | 0.69 | 0.91118 |
Target: 5'- cACCCUggCGAAGGGGGGCGGGGuGGGGa -3' miRNA: 3'- -UGGGGg-GUUUUUUCCUGCUCCuUCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 116625 | 0.67 | 0.953033 |
Target: 5'- cGCCCgCCCGccGAcGAGGGCGAGGc---- -3' miRNA: 3'- -UGGG-GGGU--UUuUUCCUGCUCCuucuu -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 117754 | 0.77 | 0.512518 |
Target: 5'- cGCCCCcaacgcgacucggguCCGGAucGGGGCGGGGAGGAGg -3' miRNA: 3'- -UGGGG---------------GGUUUuuUCCUGCUCCUUCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 121556 | 0.7 | 0.876588 |
Target: 5'- cGCCguCCUCGGcGAAGGGCGGGGAcGAGg -3' miRNA: 3'- -UGG--GGGGUUuUUUCCUGCUCCUuCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 121688 | 0.72 | 0.777798 |
Target: 5'- cGCCCUCCAGGuugcgcauGGAGGcguagacgccgacgGCGGGGGAGAAg -3' miRNA: 3'- -UGGGGGGUUU--------UUUCC--------------UGCUCCUUCUU- -5' |
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23825 | 5' | -51.8 | NC_005261.1 | + | 137113 | 0.66 | 0.970961 |
Target: 5'- gACCCgCgCGGcggcguuuuguGGAAGGAgCGAGGGAGGAg -3' miRNA: 3'- -UGGGgG-GUU-----------UUUUCCU-GCUCCUUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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