miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23828 3' -46.2 NC_005261.1 + 63625 0.66 0.999866
Target:  5'- cCCAGCGUUgacgcugucgCGCACGAAGC-CGu--- -3'
miRNA:   3'- cGGUCGCAA----------GCGUGUUUUGaGUuauu -5'
23828 3' -46.2 NC_005261.1 + 108515 0.66 0.999866
Target:  5'- gGCCAcGCcg-CGCACGAAGggguCUCGGUAGg -3'
miRNA:   3'- -CGGU-CGcaaGCGUGUUUU----GAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 48211 0.66 0.999866
Target:  5'- gGCCGGCGcgCGUuuCAGAGCgcgCAAa-- -3'
miRNA:   3'- -CGGUCGCaaGCGu-GUUUUGa--GUUauu -5'
23828 3' -46.2 NC_005261.1 + 59258 0.66 0.999866
Target:  5'- cGCCGGCGccacgcgUCGCACGGcGugUCGc--- -3'
miRNA:   3'- -CGGUCGCa------AGCGUGUU-UugAGUuauu -5'
23828 3' -46.2 NC_005261.1 + 44982 0.66 0.999898
Target:  5'- gGCCcgGGCGggcCGcCACAGGuGCUCGAUGAc -3'
miRNA:   3'- -CGG--UCGCaa-GC-GUGUUU-UGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 75319 0.66 0.999898
Target:  5'- cGUCGGCGg-CGCGCGGAGCcCuGUGAc -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUUUGaGuUAUU- -5'
23828 3' -46.2 NC_005261.1 + 92156 0.66 0.999923
Target:  5'- cUCGGCGagCGCGC---GCUCGGUGGa -3'
miRNA:   3'- cGGUCGCaaGCGUGuuuUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 100210 0.66 0.999923
Target:  5'- gGCCAGCagcccCGCGUAGAGCUCGGc-- -3'
miRNA:   3'- -CGGUCGcaa--GCGUGUUUUGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 69056 0.71 0.984452
Target:  5'- uGCCAGCGcUUCGCGCuauGC-CAGUu- -3'
miRNA:   3'- -CGGUCGC-AAGCGUGuuuUGaGUUAuu -5'
23828 3' -46.2 NC_005261.1 + 8710 1.1 0.018775
Target:  5'- uGCCAGCGUUCGCACAAAACUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 24762 1.06 0.032265
Target:  5'- uGCCAGUGUUCGCACAGAGCUCAAUAAg -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 8898 1.05 0.035298
Target:  5'- uGCCAGUGUUCGCACAAAGCUCAAUAAu -3'
miRNA:   3'- -CGGUCGCAAGCGUGUUUUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 24963 0.75 0.903099
Target:  5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3'
miRNA:   3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 25077 0.75 0.903099
Target:  5'- cCCAGaaUUCGCACuuGGCUCAAUAAu -3'
miRNA:   3'- cGGUCgcAAGCGUGuuUUGAGUUAUU- -5'
23828 3' -46.2 NC_005261.1 + 112174 0.74 0.934
Target:  5'- cGCCGGCcg-CGCGCGGGGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaaGCGUGUUUUGAGUuauu -5'
23828 3' -46.2 NC_005261.1 + 39993 0.74 0.949117
Target:  5'- cGCCGGCGUgCGUgaaggcguacgaGCAGAACUCGGg-- -3'
miRNA:   3'- -CGGUCGCAaGCG------------UGUUUUGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 68156 0.73 0.961736
Target:  5'- gGCCGGCuacacgCGCGCGGAGCUCGc--- -3'
miRNA:   3'- -CGGUCGcaa---GCGUGUUUUGAGUuauu -5'
23828 3' -46.2 NC_005261.1 + 61230 0.73 0.96541
Target:  5'- cGCuCGGCGUUCGgCGCG-AGCUCGAc-- -3'
miRNA:   3'- -CG-GUCGCAAGC-GUGUuUUGAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 72236 0.73 0.968829
Target:  5'- gGCCGGCGgugCGCGCAAAG-UCGAc-- -3'
miRNA:   3'- -CGGUCGCaa-GCGUGUUUUgAGUUauu -5'
23828 3' -46.2 NC_005261.1 + 76472 0.72 0.973201
Target:  5'- cGCCGGCGcgCGCGCGGAccccgagcccucggcGCUCGc--- -3'
miRNA:   3'- -CGGUCGCaaGCGUGUUU---------------UGAGUuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.