miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23828 5' -44.1 NC_005261.1 + 36448 0.69 0.999566
Target:  5'- ------aGAGCUAAGUGCaGAGcgUCUGa -3'
miRNA:   3'- auaauaaCUCGGUUCACG-CUUa-AGAC- -5'
23828 5' -44.1 NC_005261.1 + 128125 0.7 0.999134
Target:  5'- ------cGGGCCGAGUGCGGAg---- -3'
miRNA:   3'- auaauaaCUCGGUUCACGCUUaagac -5'
23828 5' -44.1 NC_005261.1 + 24999 0.73 0.992208
Target:  5'- -cUUAUUGAGUUuuGUGCGAAcgCUGg -3'
miRNA:   3'- auAAUAACUCGGuuCACGCUUaaGAC- -5'
23828 5' -44.1 NC_005261.1 + 25115 0.73 0.992208
Target:  5'- -cUUAUUGAGUUuuGUGCGAAcgCUGg -3'
miRNA:   3'- auAAUAACUCGGuuCACGCUUaaGAC- -5'
23828 5' -44.1 NC_005261.1 + 8948 0.75 0.971466
Target:  5'- -cUUAUUGAGCUcuGUGCGAAcaCUGg -3'
miRNA:   3'- auAAUAACUCGGuuCACGCUUaaGAC- -5'
23828 5' -44.1 NC_005261.1 + 24811 0.79 0.860446
Target:  5'- aAUUAUUGAGCUuuGUGCGAAcaCUGg -3'
miRNA:   3'- aUAAUAACUCGGuuCACGCUUaaGAC- -5'
23828 5' -44.1 NC_005261.1 + 8631 1.1 0.029998
Target:  5'- aUAUUAUUGAGCCAAGUGCGAAUUCUGg -3'
miRNA:   3'- -AUAAUAACUCGGUUCACGCUUAAGAC- -5'
23828 5' -44.1 NC_005261.1 + 8745 1.1 0.029998
Target:  5'- aUAUUAUUGAGCCAAGUGCGAAUUCUGg -3'
miRNA:   3'- -AUAAUAACUCGGUUCACGCUUAAGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.