Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2383 | 5' | -56 | NC_001416.1 | + | 16699 | 1.1 | 0.000764 |
Target: 5'- uUGACCCGAACAACGGCUGGGAGACGGc -3' miRNA: 3'- -ACUGGGCUUGUUGCCGACCCUCUGCC- -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 15908 | 0.74 | 0.258968 |
Target: 5'- aGAUacaaCGuAACggUGGCUGGGuGACGGa -3' miRNA: 3'- aCUGg---GC-UUGuuGCCGACCCuCUGCC- -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 12422 | 0.72 | 0.340037 |
Target: 5'- aGGCCUGAAgucCGGCUGGaguGAGugGGa -3' miRNA: 3'- aCUGGGCUUguuGCCGACC---CUCugCC- -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 3792 | 0.68 | 0.528988 |
Target: 5'- -aGCgCCGGuc--CGGCUGGGAGGCGc -3' miRNA: 3'- acUG-GGCUuguuGCCGACCCUCUGCc -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 11044 | 0.68 | 0.539562 |
Target: 5'- aGAgCCGGGCAgGCGGCaGGGcuGACGu -3' miRNA: 3'- aCUgGGCUUGU-UGCCGaCCCu-CUGCc -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 14916 | 0.68 | 0.57168 |
Target: 5'- aGAaaCUGAGCGACGGCUGGuaucaGGuACGGa -3' miRNA: 3'- aCUg-GGCUUGUUGCCGACCc----UC-UGCC- -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 8696 | 0.67 | 0.582493 |
Target: 5'- aGAgCUGGACAGCGauacCUGGcAGGCGGa -3' miRNA: 3'- aCUgGGCUUGUUGCc---GACCcUCUGCC- -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 11378 | 0.67 | 0.624976 |
Target: 5'- aGACCCgccgccugaaagaGAACAugGGCacgcuggagaccUGGGcAGACaGGa -3' miRNA: 3'- aCUGGG-------------CUUGUugCCG------------ACCC-UCUG-CC- -5' |
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2383 | 5' | -56 | NC_001416.1 | + | 5035 | 0.66 | 0.641371 |
Target: 5'- aUGACgCCGAugGagccuguccggGCGGuCUgcgugaccagacgccGGGAGGCGGc -3' miRNA: 3'- -ACUG-GGCUugU-----------UGCC-GA---------------CCCUCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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