Results 1 - 20 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23830 | 3' | -57.7 | NC_005261.1 | + | 29909 | 0.66 | 0.817196 |
Target: 5'- -cAGCGCGCgagcgGCUgcgCGAGCUggCGGACg -3' miRNA: 3'- auUCGCGCGa----UGGa--GCUCGGg-GCUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 30728 | 0.66 | 0.817196 |
Target: 5'- cGGGC-CGCcagGCC-CGAGCCCC-AGCc -3' miRNA: 3'- aUUCGcGCGa--UGGaGCUCGGGGcUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 15847 | 0.66 | 0.816324 |
Target: 5'- cGAGCGCGCUagaggacgaggucGCggcaauggCUCGAGUCgCCGAcGCg -3' miRNA: 3'- aUUCGCGCGA-------------UG--------GAGCUCGG-GGCU-UG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 118792 | 0.66 | 0.814577 |
Target: 5'- -cGGCGCGCUgauggcgcacguggGCgUCuGcGCCCUGGGCg -3' miRNA: 3'- auUCGCGCGA--------------UGgAG-CuCGGGGCUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 100567 | 0.66 | 0.808407 |
Target: 5'- -cAGCGUGCacaccgccGCCUCGucGCCCagGAGCg -3' miRNA: 3'- auUCGCGCGa-------UGGAGCu-CGGGg-CUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 76076 | 0.66 | 0.808407 |
Target: 5'- aGGGCGgGCUgcugcGCCUCGuGGCgCUgGAGCu -3' miRNA: 3'- aUUCGCgCGA-----UGGAGC-UCG-GGgCUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 105140 | 0.66 | 0.808407 |
Target: 5'- -cGGCGCGCgcagguCCUCGcGGCUCgaGGGCg -3' miRNA: 3'- auUCGCGCGau----GGAGC-UCGGGg-CUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 48665 | 0.66 | 0.808407 |
Target: 5'- aGAGcCGCGCggcaacggcgACUaCGGGCCCgCGGGCc -3' miRNA: 3'- aUUC-GCGCGa---------UGGaGCUCGGG-GCUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 86873 | 0.66 | 0.808407 |
Target: 5'- cGGGCGCgGCgGCCUUGGccgcGCCCUGGuccGCg -3' miRNA: 3'- aUUCGCG-CGaUGGAGCU----CGGGGCU---UG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 74789 | 0.66 | 0.808407 |
Target: 5'- --cGCGCGCauccgGCCuaUCGAGgCCCGcguGGCg -3' miRNA: 3'- auuCGCGCGa----UGG--AGCUCgGGGC---UUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 52667 | 0.66 | 0.808407 |
Target: 5'- --cGCGCGC-ACUUCGAgcggGCCCUGcuCg -3' miRNA: 3'- auuCGCGCGaUGGAGCU----CGGGGCuuG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 34418 | 0.66 | 0.807519 |
Target: 5'- -uGGCGCGCgGCCcgCGccuGCCCCugcugccGAACg -3' miRNA: 3'- auUCGCGCGaUGGa-GCu--CGGGG-------CUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 39398 | 0.66 | 0.799456 |
Target: 5'- -uGGCG-GCgACC-CGAGCCCC-AGCg -3' miRNA: 3'- auUCGCgCGaUGGaGCUCGGGGcUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 23742 | 0.66 | 0.799456 |
Target: 5'- gAGGCGCGU--CCgggaggggCGGgcuuGCCCCGGGCg -3' miRNA: 3'- aUUCGCGCGauGGa-------GCU----CGGGGCUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 46995 | 0.66 | 0.799456 |
Target: 5'- -cAGCGCGCgccgcGCCgccgCGAugcggcgguccaGCCCCGcGACg -3' miRNA: 3'- auUCGCGCGa----UGGa---GCU------------CGGGGC-UUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 85019 | 0.66 | 0.799456 |
Target: 5'- gGGGuCGCGCgGCCgcCGcGCCCCGGccACg -3' miRNA: 3'- aUUC-GCGCGaUGGa-GCuCGGGGCU--UG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 133362 | 0.66 | 0.799456 |
Target: 5'- --cGCGCagggcuucgGCUGCCUgCGcgcGGCCCaCGGGCg -3' miRNA: 3'- auuCGCG---------CGAUGGA-GC---UCGGG-GCUUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 21829 | 0.66 | 0.799456 |
Target: 5'- cGGGCGCGCgUGCgggCGGgcucGCCCCGcAGCu -3' miRNA: 3'- aUUCGCGCG-AUGga-GCU----CGGGGC-UUG- -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 35803 | 0.66 | 0.799456 |
Target: 5'- -uGGCGCGggacgGCCUgGAccccgGCCCCGAGa -3' miRNA: 3'- auUCGCGCga---UGGAgCU-----CGGGGCUUg -5' |
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23830 | 3' | -57.7 | NC_005261.1 | + | 96288 | 0.66 | 0.799456 |
Target: 5'- -uGGCGCgGCUucgGCCUCG-GCCgCGcGCa -3' miRNA: 3'- auUCGCG-CGA---UGGAGCuCGGgGCuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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