miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23830 5' -59.3 NC_005261.1 + 17722 0.66 0.73454
Target:  5'- -uGCccGGGAAucGGAGCGgcgcuCGGAGCGgGCg -3'
miRNA:   3'- cuCGa-CCCUU--CCUCGC-----GCCUCGUgUG- -5'
23830 5' -59.3 NC_005261.1 + 120428 0.66 0.73454
Target:  5'- uGGGCUGGuGAAcauGCGCGGcGUGCGCc -3'
miRNA:   3'- -CUCGACC-CUUccuCGCGCCuCGUGUG- -5'
23830 5' -59.3 NC_005261.1 + 9126 0.66 0.73454
Target:  5'- -cGCcGGGAcuGGGGGCG-GGuGCAgGCa -3'
miRNA:   3'- cuCGaCCCU--UCCUCGCgCCuCGUgUG- -5'
23830 5' -59.3 NC_005261.1 + 98920 0.66 0.73454
Target:  5'- cGGCgGGGucGGcuGCGgGGGGCAgCGCg -3'
miRNA:   3'- cUCGaCCCuuCCu-CGCgCCUCGU-GUG- -5'
23830 5' -59.3 NC_005261.1 + 101685 0.66 0.73454
Target:  5'- cGAGCcGGcGAAGcGGGCGUGGucgaAGCGCu- -3'
miRNA:   3'- -CUCGaCC-CUUC-CUCGCGCC----UCGUGug -5'
23830 5' -59.3 NC_005261.1 + 21618 0.66 0.73454
Target:  5'- cGAGCUucGGGcGAGGguccccgccccGGCGCGGAcGC-CGCu -3'
miRNA:   3'- -CUCGA--CCC-UUCC-----------UCGCGCCU-CGuGUG- -5'
23830 5' -59.3 NC_005261.1 + 73206 0.66 0.73454
Target:  5'- uGGCcccGGGcgccucGAGGGGCGCGGuGGC-CGCg -3'
miRNA:   3'- cUCGa--CCC------UUCCUCGCGCC-UCGuGUG- -5'
23830 5' -59.3 NC_005261.1 + 48028 0.66 0.724715
Target:  5'- aGAGCaGGGcGAGGAGCaCGc-GCGCGCg -3'
miRNA:   3'- -CUCGaCCC-UUCCUCGcGCcuCGUGUG- -5'
23830 5' -59.3 NC_005261.1 + 92140 0.66 0.724715
Target:  5'- cGGGCUGGGccAGGAcCuCGGcgAGCGCGCg -3'
miRNA:   3'- -CUCGACCCu-UCCUcGcGCC--UCGUGUG- -5'
23830 5' -59.3 NC_005261.1 + 58303 0.66 0.723728
Target:  5'- gGGGCgcgGGGAGGGGGCGgcccagcCGcccGAGCAC-Cg -3'
miRNA:   3'- -CUCGa--CCCUUCCUCGC-------GC---CUCGUGuG- -5'
23830 5' -59.3 NC_005261.1 + 56005 0.66 0.714811
Target:  5'- cGGCggGGGcGGGGGCGgGGAagACGCa -3'
miRNA:   3'- cUCGa-CCCuUCCUCGCgCCUcgUGUG- -5'
23830 5' -59.3 NC_005261.1 + 27169 0.66 0.714811
Target:  5'- gGGGCgguaagugGGGAAGGAaaGgGGAGCAaACg -3'
miRNA:   3'- -CUCGa-------CCCUUCCUcgCgCCUCGUgUG- -5'
23830 5' -59.3 NC_005261.1 + 68615 0.66 0.714811
Target:  5'- cGGCgugGGGGAGGAuGCGCGcccGCcCGCg -3'
miRNA:   3'- cUCGa--CCCUUCCU-CGCGCcu-CGuGUG- -5'
23830 5' -59.3 NC_005261.1 + 22094 0.66 0.704836
Target:  5'- -cGCgUGGGGgcGGGAGgGCGGuGUGCGg -3'
miRNA:   3'- cuCG-ACCCU--UCCUCgCGCCuCGUGUg -5'
23830 5' -59.3 NC_005261.1 + 72446 0.66 0.703835
Target:  5'- cGGCgGGGGcgcccgcGGcGAGCGCGGcgAGCGCGa -3'
miRNA:   3'- cUCGaCCCU-------UC-CUCGCGCC--UCGUGUg -5'
23830 5' -59.3 NC_005261.1 + 44207 0.66 0.703835
Target:  5'- cGAGCUGcaggcGGcccGGGAGCGCGcGcugcuggccgcccAGCGCGCg -3'
miRNA:   3'- -CUCGAC-----CCu--UCCUCGCGC-C-------------UCGUGUG- -5'
23830 5' -59.3 NC_005261.1 + 15969 0.66 0.698821
Target:  5'- cGGGCgGGGGAGG-GCcCGGgccgcucacccgggcAGCGCGCu -3'
miRNA:   3'- -CUCGaCCCUUCCuCGcGCC---------------UCGUGUG- -5'
23830 5' -59.3 NC_005261.1 + 11432 0.66 0.6948
Target:  5'- cGGGCgGGGggGGcggcggaagagGGaaaaagaaGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCC-----------UCg-------CGCCUCGUgUG- -5'
23830 5' -59.3 NC_005261.1 + 98356 0.66 0.6948
Target:  5'- gGGGCgGGGguGG-GCGCGGgcucuggcgGGCGCAa -3'
miRNA:   3'- -CUCGaCCCuuCCuCGCGCC---------UCGUGUg -5'
23830 5' -59.3 NC_005261.1 + 84108 0.66 0.693793
Target:  5'- gGGGCgggaugGGGAGGGGGgcaGCGGGcggggucGCugGCg -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCg--CGCCU-------CGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.