Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23832 | 5' | -61.4 | NC_005261.1 | + | 22634 | 0.66 | 0.667453 |
Target: 5'- -cGCC-CCGUCCCgUCCCuagacgcgcuggcGGCGccuGGGc -3' miRNA: 3'- gaCGGcGGCAGGGgAGGG-------------CCGUu--UCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 90047 | 0.66 | 0.662539 |
Target: 5'- cCUGCUGCCGgacagccagcggcgCCCCg-CgGGCGccGAGGg -3' miRNA: 3'- -GACGGCGGCa-------------GGGGagGgCCGU--UUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 100105 | 0.66 | 0.658605 |
Target: 5'- gCUGCCGCCG-CCCagcggcgCCC-GCAccGGc -3' miRNA: 3'- -GACGGCGGCaGGGga-----GGGcCGUuuCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 53368 | 0.66 | 0.658605 |
Target: 5'- -gGCCGCCG-CCCCggCCgCGGUg---- -3' miRNA: 3'- gaCGGCGGCaGGGGa-GG-GCCGuuucc -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 71452 | 0.66 | 0.658605 |
Target: 5'- -aGCCGCCG---CCUCCCGGagcaucagGAAGGc -3' miRNA: 3'- gaCGGCGGCaggGGAGGGCCg-------UUUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 28890 | 0.66 | 0.658605 |
Target: 5'- -cGCCGCCG-CCUgcgCCCaacGCGGAGGa -3' miRNA: 3'- gaCGGCGGCaGGGga-GGGc--CGUUUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 105134 | 0.66 | 0.657621 |
Target: 5'- -gGCCGCCGgcgCgcgcaggUCCUCgCGGCucGAGGg -3' miRNA: 3'- gaCGGCGGCa--G-------GGGAGgGCCGu-UUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 69389 | 0.66 | 0.648755 |
Target: 5'- aUGaCCGCCGUCCugagccuggCCUCCCGacacacGCGccGGc -3' miRNA: 3'- gAC-GGCGGCAGG---------GGAGGGC------CGUuuCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 91141 | 0.66 | 0.648755 |
Target: 5'- -gGCCucaGCCGUgCCg-CCCGGCGAGuGGc -3' miRNA: 3'- gaCGG---CGGCAgGGgaGGGCCGUUU-CC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 125678 | 0.66 | 0.64777 |
Target: 5'- gUGCCGCCGaauggguUUgCCgggcuuggCCCGGCGAcGGc -3' miRNA: 3'- gACGGCGGC-------AGgGGa-------GGGCCGUUuCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 111647 | 0.66 | 0.638893 |
Target: 5'- -cGCCGCCGcCucccagCCCUCCCGcGCcgcGGu -3' miRNA: 3'- gaCGGCGGCaG------GGGAGGGC-CGuuuCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 53428 | 0.66 | 0.638893 |
Target: 5'- --cCCGCCGUCCgCCagCCCgucgGGCGucGGg -3' miRNA: 3'- gacGGCGGCAGG-GGa-GGG----CCGUuuCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 16394 | 0.66 | 0.638893 |
Target: 5'- -cGCCGUCGUCgUCgCCgGGCGGugcGGGa -3' miRNA: 3'- gaCGGCGGCAGgGGaGGgCCGUU---UCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 80673 | 0.67 | 0.629027 |
Target: 5'- gUGCgCGCCGUCgCggagCCCGuaGAAGGg -3' miRNA: 3'- gACG-GCGGCAGgGga--GGGCcgUUUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 43811 | 0.67 | 0.626067 |
Target: 5'- -gGgCGCCGggcgCgCCCUCCguggagaagcugcuCGGCGAGGGc -3' miRNA: 3'- gaCgGCGGCa---G-GGGAGG--------------GCCGUUUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 117287 | 0.67 | 0.620148 |
Target: 5'- cCUGgCGCCGagCCCgcccucgagcccagcCCCGGCGcGGGc -3' miRNA: 3'- -GACgGCGGCagGGGa--------------GGGCCGUuUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 127688 | 0.67 | 0.619162 |
Target: 5'- -gGCCGCUG-CCCCgg-CGGCGccgGAGGa -3' miRNA: 3'- gaCGGCGGCaGGGGaggGCCGU---UUCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 89430 | 0.67 | 0.619162 |
Target: 5'- -gGCCGCCGggcUCCCCgcgCCCGcCGugcuGGa -3' miRNA: 3'- gaCGGCGGC---AGGGGa--GGGCcGUuu--CC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 51779 | 0.67 | 0.619162 |
Target: 5'- -gGCCGgCGUCgCCCUgCUGGCcguGGc -3' miRNA: 3'- gaCGGCgGCAG-GGGAgGGCCGuuuCC- -5' |
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23832 | 5' | -61.4 | NC_005261.1 | + | 9034 | 0.67 | 0.619162 |
Target: 5'- aUGCaC-CCGcCCCCcgUCCCGGCAuccccuGGGu -3' miRNA: 3'- gACG-GcGGCaGGGG--AGGGCCGUu-----UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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