miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 13397 0.73 0.479937
Target:  5'- gCgGUCUCGGAgCGGU-AGGGCGACGc -3'
miRNA:   3'- aGgUAGAGCCU-GCCGcUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 2831 0.73 0.452459
Target:  5'- cCCGagCUCGGGCGGCaGGGcCGGCGg -3'
miRNA:   3'- aGGUa-GAGCCUGCCGcUCCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 55215 0.75 0.375578
Target:  5'- aUCCGgcggCcCGaGGCGGCGAGGGCGGCa- -3'
miRNA:   3'- -AGGUa---GaGC-CUGCCGCUCCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 77766 0.75 0.351985
Target:  5'- gCCG----GGGCGGCGGGGACGACGa -3'
miRNA:   3'- aGGUagagCCUGCCGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 115768 0.76 0.344358
Target:  5'- cCCGUCUCGG-CGGCGucGACGuacGCGUa -3'
miRNA:   3'- aGGUAGAGCCuGCCGCucCUGC---UGCA- -5'
23833 5' -57.6 NC_005261.1 + 91400 0.71 0.576582
Target:  5'- aUCGUCgCGccCGGCGAGGACGugGa -3'
miRNA:   3'- aGGUAGaGCcuGCCGCUCCUGCugCa -5'
23833 5' -57.6 NC_005261.1 + 22898 0.71 0.596549
Target:  5'- cUCCGaCgacgaGGACGaCGAGGACGACGa -3'
miRNA:   3'- -AGGUaGag---CCUGCcGCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 43827 0.69 0.7164
Target:  5'- cUCCGUggagaagcugCUCGGcgAgGGCGAGGACG-CGg -3'
miRNA:   3'- -AGGUA----------GAGCC--UgCCGCUCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 4521 0.69 0.7164
Target:  5'- gCCcgCgCGGgcgccGCGGCGAGGGCGcCGg -3'
miRNA:   3'- aGGuaGaGCC-----UGCCGCUCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 104166 0.69 0.690784
Target:  5'- gCCGUCcgCGGGCGccGCGcgcgggucgucgggcGGGACGGCGUc -3'
miRNA:   3'- aGGUAGa-GCCUGC--CGC---------------UCCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 90117 0.69 0.676849
Target:  5'- gCCGaCgCGGcccGCGGCGAGGGCGAgGa -3'
miRNA:   3'- aGGUaGaGCC---UGCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 11431 0.69 0.666852
Target:  5'- ------gCGGGCGGgGGGGGCGGCGg -3'
miRNA:   3'- agguagaGCCUGCCgCUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 104079 0.7 0.656827
Target:  5'- gUCCAgCUCGG-CGGacAGGGCGGCGg -3'
miRNA:   3'- -AGGUaGAGCCuGCCgcUCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 78409 0.7 0.656827
Target:  5'- cUCCGUgCUCuGugGGCGAugggggGGGCGAUGg -3'
miRNA:   3'- -AGGUA-GAGcCugCCGCU------CCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 39371 0.7 0.656827
Target:  5'- cUCAUCggCGGcCGGgGAGGGCGGCc- -3'
miRNA:   3'- aGGUAGa-GCCuGCCgCUCCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 59770 0.7 0.646783
Target:  5'- cUCCAUgugCUCGGccgcagcgACGGCGGcGGGCGGCa- -3'
miRNA:   3'- -AGGUA---GAGCC--------UGCCGCU-CCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 109776 0.7 0.633711
Target:  5'- gCCGUCUCGGGCGucccggccgcugcuGCGAcGGcCGGCGc -3'
miRNA:   3'- aGGUAGAGCCUGC--------------CGCU-CCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 130483 0.7 0.626671
Target:  5'- -gCGUgcCUCGG-CGGCGAGGgccccgACGACGUg -3'
miRNA:   3'- agGUA--GAGCCuGCCGCUCC------UGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 107175 0.7 0.620637
Target:  5'- cUCCGUCUCGGcgGCGuagcccugcagccgcGCGAaGGCGGCGUg -3'
miRNA:   3'- -AGGUAGAGCC--UGC---------------CGCUcCUGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 56564 0.7 0.616616
Target:  5'- gUCCuUCUCGcaccucGGCGGCGAcGACGGCGc -3'
miRNA:   3'- -AGGuAGAGC------CUGCCGCUcCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.