Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23833 | 5' | -57.6 | NC_005261.1 | + | 13397 | 0.73 | 0.479937 |
Target: 5'- gCgGUCUCGGAgCGGU-AGGGCGACGc -3' miRNA: 3'- aGgUAGAGCCU-GCCGcUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 2831 | 0.73 | 0.452459 |
Target: 5'- cCCGagCUCGGGCGGCaGGGcCGGCGg -3' miRNA: 3'- aGGUa-GAGCCUGCCGcUCCuGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 55215 | 0.75 | 0.375578 |
Target: 5'- aUCCGgcggCcCGaGGCGGCGAGGGCGGCa- -3' miRNA: 3'- -AGGUa---GaGC-CUGCCGCUCCUGCUGca -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 77766 | 0.75 | 0.351985 |
Target: 5'- gCCG----GGGCGGCGGGGACGACGa -3' miRNA: 3'- aGGUagagCCUGCCGCUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 115768 | 0.76 | 0.344358 |
Target: 5'- cCCGUCUCGG-CGGCGucGACGuacGCGUa -3' miRNA: 3'- aGGUAGAGCCuGCCGCucCUGC---UGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 91400 | 0.71 | 0.576582 |
Target: 5'- aUCGUCgCGccCGGCGAGGACGugGa -3' miRNA: 3'- aGGUAGaGCcuGCCGCUCCUGCugCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 22898 | 0.71 | 0.596549 |
Target: 5'- cUCCGaCgacgaGGACGaCGAGGACGACGa -3' miRNA: 3'- -AGGUaGag---CCUGCcGCUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 43827 | 0.69 | 0.7164 |
Target: 5'- cUCCGUggagaagcugCUCGGcgAgGGCGAGGACG-CGg -3' miRNA: 3'- -AGGUA----------GAGCC--UgCCGCUCCUGCuGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 4521 | 0.69 | 0.7164 |
Target: 5'- gCCcgCgCGGgcgccGCGGCGAGGGCGcCGg -3' miRNA: 3'- aGGuaGaGCC-----UGCCGCUCCUGCuGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 104166 | 0.69 | 0.690784 |
Target: 5'- gCCGUCcgCGGGCGccGCGcgcgggucgucgggcGGGACGGCGUc -3' miRNA: 3'- aGGUAGa-GCCUGC--CGC---------------UCCUGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 90117 | 0.69 | 0.676849 |
Target: 5'- gCCGaCgCGGcccGCGGCGAGGGCGAgGa -3' miRNA: 3'- aGGUaGaGCC---UGCCGCUCCUGCUgCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 11431 | 0.69 | 0.666852 |
Target: 5'- ------gCGGGCGGgGGGGGCGGCGg -3' miRNA: 3'- agguagaGCCUGCCgCUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 104079 | 0.7 | 0.656827 |
Target: 5'- gUCCAgCUCGG-CGGacAGGGCGGCGg -3' miRNA: 3'- -AGGUaGAGCCuGCCgcUCCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 78409 | 0.7 | 0.656827 |
Target: 5'- cUCCGUgCUCuGugGGCGAugggggGGGCGAUGg -3' miRNA: 3'- -AGGUA-GAGcCugCCGCU------CCUGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 39371 | 0.7 | 0.656827 |
Target: 5'- cUCAUCggCGGcCGGgGAGGGCGGCc- -3' miRNA: 3'- aGGUAGa-GCCuGCCgCUCCUGCUGca -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 59770 | 0.7 | 0.646783 |
Target: 5'- cUCCAUgugCUCGGccgcagcgACGGCGGcGGGCGGCa- -3' miRNA: 3'- -AGGUA---GAGCC--------UGCCGCU-CCUGCUGca -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 109776 | 0.7 | 0.633711 |
Target: 5'- gCCGUCUCGGGCGucccggccgcugcuGCGAcGGcCGGCGc -3' miRNA: 3'- aGGUAGAGCCUGC--------------CGCU-CCuGCUGCa -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 130483 | 0.7 | 0.626671 |
Target: 5'- -gCGUgcCUCGG-CGGCGAGGgccccgACGACGUg -3' miRNA: 3'- agGUA--GAGCCuGCCGCUCC------UGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 107175 | 0.7 | 0.620637 |
Target: 5'- cUCCGUCUCGGcgGCGuagcccugcagccgcGCGAaGGCGGCGUg -3' miRNA: 3'- -AGGUAGAGCC--UGC---------------CGCUcCUGCUGCA- -5' |
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23833 | 5' | -57.6 | NC_005261.1 | + | 56564 | 0.7 | 0.616616 |
Target: 5'- gUCCuUCUCGcaccucGGCGGCGAcGACGGCGc -3' miRNA: 3'- -AGGuAGAGC------CUGCCGCUcCUGCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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