miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 3' -50.7 NC_005261.1 + 1008 0.67 0.988136
Target:  5'- --gGCGggGGGCGggGGGcgggugggcuuuugcGGAGGGcGGc -3'
miRNA:   3'- gggCGCaaCCCGCuuUUU---------------UCUUCC-CC- -5'
23834 3' -50.7 NC_005261.1 + 15942 0.67 0.987522
Target:  5'- gCCCGgGcaggagccggGGGCGAGuggcGGgcGGGGg -3'
miRNA:   3'- -GGGCgCaa--------CCCGCUUuuu-UCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 127331 0.67 0.987522
Target:  5'- gCCCGCGggGGcCGGAGc--GgcGGGGc -3'
miRNA:   3'- -GGGCGCaaCCcGCUUUuuuCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 33796 0.67 0.987365
Target:  5'- cCCCGCGc-GGGCGGcgGGcuugucuuugggcGGccGGGGg -3'
miRNA:   3'- -GGGCGCaaCCCGCUuuUU-------------UCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 81446 0.67 0.987206
Target:  5'- cCCCGCGgcGGGCGccgccagcAGcAGGGc -3'
miRNA:   3'- -GGGCGCaaCCCGCuuuuu---UCuUCCCc -5'
23834 3' -50.7 NC_005261.1 + 27667 0.67 0.985881
Target:  5'- gCCC-CuUUGGGagaaGAagaaggagAAGAAGAAGGGGg -3'
miRNA:   3'- -GGGcGcAACCCg---CU--------UUUUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 27208 0.67 0.985881
Target:  5'- --gGCGgaGGGgGGGAAAGGGggaagggugaAGGGGg -3'
miRNA:   3'- gggCGCaaCCCgCUUUUUUCU----------UCCCC- -5'
23834 3' -50.7 NC_005261.1 + 22127 0.67 0.985881
Target:  5'- gCgUGCGguauacGGCGggGggGGGGAAGGGGc -3'
miRNA:   3'- -GgGCGCaac---CCGCuuU--UUUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 11465 0.67 0.985881
Target:  5'- --aGCGgagcGGGCGcgGAGGGgcGGGGc -3'
miRNA:   3'- gggCGCaa--CCCGCuuUUUUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 7054 0.68 0.982314
Target:  5'- cUCCGCGUccGGGCGuguggcccAGGGGc -3'
miRNA:   3'- -GGGCGCAa-CCCGCuuuuuucuUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 117767 0.68 0.982109
Target:  5'- aCUCGgGUccggaucgGGGCGG--GGAGGAGGGa -3'
miRNA:   3'- -GGGCgCAa-------CCCGCUuuUUUCUUCCCc -5'
23834 3' -50.7 NC_005261.1 + 30384 0.68 0.979961
Target:  5'- gCCGCGgcgcGGGUGGAGguGGAGGAcaugcgggccGGGGc -3'
miRNA:   3'- gGGCGCaa--CCCGCUUU--UUUCUU----------CCCC- -5'
23834 3' -50.7 NC_005261.1 + 25462 0.68 0.977626
Target:  5'- aCCCaGCcg-GGGCuuGAGuGGGAAGGGGa -3'
miRNA:   3'- -GGG-CGcaaCCCGcuUUU-UUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 138092 0.68 0.977626
Target:  5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3'
miRNA:   3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 23734 0.68 0.977626
Target:  5'- gCCGCGccGaGGCGcguccGGGAGGGGc -3'
miRNA:   3'- gGGCGCaaC-CCGCuuuuuUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 421 0.68 0.977626
Target:  5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3'
miRNA:   3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 73255 0.68 0.975097
Target:  5'- cUCCGCGUUGaucucGCGGAGgcaguagcgGgcGAAGGGGu -3'
miRNA:   3'- -GGGCGCAACc----CGCUUU---------UuuCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 11435 0.68 0.975097
Target:  5'- -gCGgGggGGGCGGcgGAAGAGGGa- -3'
miRNA:   3'- ggGCgCaaCCCGCUuuUUUCUUCCcc -5'
23834 3' -50.7 NC_005261.1 + 21821 0.69 0.969424
Target:  5'- gCCCGCGgcGGGCGcgcgugcGGgcGGGc -3'
miRNA:   3'- -GGGCGCaaCCCGCuuuuu--UCuuCCCc -5'
23834 3' -50.7 NC_005261.1 + 129548 0.69 0.969424
Target:  5'- gCCGCaaggugcaagacGgcGGGCGuAGAGGAGGAGGcGGc -3'
miRNA:   3'- gGGCG------------CaaCCCGC-UUUUUUCUUCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.