Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23835 | 3' | -64.9 | NC_005261.1 | + | 2894 | 0.66 | 0.497093 |
Target: 5'- cGGCCCCGuccCCGG-GCCCCcccAGCUCCu -3' miRNA: 3'- -UUGGGGC---GGCCuCGGGGac-UUGGGGc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 36582 | 0.66 | 0.491608 |
Target: 5'- gGGgCCCGCCgcggccaccggggggGGGcagcGCUCCUGcGCCCCGg -3' miRNA: 3'- -UUgGGGCGG---------------CCU----CGGGGACuUGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 29361 | 0.66 | 0.487966 |
Target: 5'- cGACaCUCGCgaGG-GCCUCUGGgacuGCCCCGa -3' miRNA: 3'- -UUG-GGGCGg-CCuCGGGGACU----UGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 30560 | 0.66 | 0.487966 |
Target: 5'- cGCCgCCGCCGGGGCCUC-GGACggggaCGg -3' miRNA: 3'- uUGG-GGCGGCCUCGGGGaCUUGgg---GC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 119963 | 0.66 | 0.487966 |
Target: 5'- cGCaCCCGCCGu--CUCCgucGAGCCCCGg -3' miRNA: 3'- uUG-GGGCGGCcucGGGGa--CUUGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 16252 | 0.66 | 0.487966 |
Target: 5'- -uCCgCGCCGGGGCCgCCggggccGGGCUUCGg -3' miRNA: 3'- uuGGgGCGGCCUCGG-GGa-----CUUGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 48627 | 0.66 | 0.487966 |
Target: 5'- cAGCCCCacGCCcc-GCCCCUGcgccGGCCCCc -3' miRNA: 3'- -UUGGGG--CGGccuCGGGGAC----UUGGGGc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 9804 | 0.66 | 0.487966 |
Target: 5'- cACCCCaGCUGGcccAGCCCagcGAGCCCa- -3' miRNA: 3'- uUGGGG-CGGCC---UCGGGga-CUUGGGgc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 83853 | 0.66 | 0.478919 |
Target: 5'- cGGCCCCGCUGGgcugGGCCgggCC-GGACgCCGg -3' miRNA: 3'- -UUGGGGCGGCC----UCGG---GGaCUUGgGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 128328 | 0.66 | 0.478919 |
Target: 5'- aGGgCCUGCgGGGGCUCCgaGAgcggcACCCCGc -3' miRNA: 3'- -UUgGGGCGgCCUCGGGGa-CU-----UGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 39392 | 0.66 | 0.478919 |
Target: 5'- cGGCCCUGgCGGcGaCCC-GAGCCCCa -3' miRNA: 3'- -UUGGGGCgGCCuCgGGGaCUUGGGGc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 91483 | 0.66 | 0.478919 |
Target: 5'- cGGCgCCGCCGcGGCCgCCgcccGCCCCGc -3' miRNA: 3'- -UUGgGGCGGCcUCGG-GGacu-UGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 77563 | 0.66 | 0.478919 |
Target: 5'- cGCCaguggCGCCGccGCgCCCUGGcACCCCGg -3' miRNA: 3'- uUGGg----GCGGCcuCG-GGGACU-UGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 72138 | 0.66 | 0.47353 |
Target: 5'- gAGCCCCGggugcgacugcacguCCGGGGUgUCCgGGAUCCCGg -3' miRNA: 3'- -UUGGGGC---------------GGCCUCG-GGGaCUUGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 12203 | 0.66 | 0.469954 |
Target: 5'- cGCCgCCGCCGGugccgccGCCgCUGcugccGCCCCa -3' miRNA: 3'- uUGG-GGCGGCCu------CGGgGACu----UGGGGc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 29264 | 0.66 | 0.469954 |
Target: 5'- cGCCgCCGCUGGAggGCCCgCUGcuGACgCCCu -3' miRNA: 3'- uUGG-GGCGGCCU--CGGG-GAC--UUG-GGGc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 32524 | 0.66 | 0.469954 |
Target: 5'- cGCCgCGCCcG-GCCCCg--GCCCCGg -3' miRNA: 3'- uUGGgGCGGcCuCGGGGacuUGGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 55927 | 0.66 | 0.469954 |
Target: 5'- cAGCCgCCGCCGGcgcgcAGCCgUUUGGcuCCCCGg -3' miRNA: 3'- -UUGG-GGCGGCC-----UCGG-GGACUu-GGGGC- -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 27464 | 0.66 | 0.468172 |
Target: 5'- cGCCCCGCgGGgcgggcaGGCCcuccccgggcgcaCCUGGACCgCCa -3' miRNA: 3'- uUGGGGCGgCC-------UCGG-------------GGACUUGG-GGc -5' |
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23835 | 3' | -64.9 | NC_005261.1 | + | 14300 | 0.66 | 0.461076 |
Target: 5'- cGGCCCCGaCCGGuAGCCCgaGGAgCgaCGg -3' miRNA: 3'- -UUGGGGC-GGCC-UCGGGgaCUUgGg-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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