miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23835 3' -64.9 NC_005261.1 + 2894 0.66 0.497093
Target:  5'- cGGCCCCGuccCCGG-GCCCCcccAGCUCCu -3'
miRNA:   3'- -UUGGGGC---GGCCuCGGGGac-UUGGGGc -5'
23835 3' -64.9 NC_005261.1 + 36582 0.66 0.491608
Target:  5'- gGGgCCCGCCgcggccaccggggggGGGcagcGCUCCUGcGCCCCGg -3'
miRNA:   3'- -UUgGGGCGG---------------CCU----CGGGGACuUGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 29361 0.66 0.487966
Target:  5'- cGACaCUCGCgaGG-GCCUCUGGgacuGCCCCGa -3'
miRNA:   3'- -UUG-GGGCGg-CCuCGGGGACU----UGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 30560 0.66 0.487966
Target:  5'- cGCCgCCGCCGGGGCCUC-GGACggggaCGg -3'
miRNA:   3'- uUGG-GGCGGCCUCGGGGaCUUGgg---GC- -5'
23835 3' -64.9 NC_005261.1 + 119963 0.66 0.487966
Target:  5'- cGCaCCCGCCGu--CUCCgucGAGCCCCGg -3'
miRNA:   3'- uUG-GGGCGGCcucGGGGa--CUUGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 16252 0.66 0.487966
Target:  5'- -uCCgCGCCGGGGCCgCCggggccGGGCUUCGg -3'
miRNA:   3'- uuGGgGCGGCCUCGG-GGa-----CUUGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 48627 0.66 0.487966
Target:  5'- cAGCCCCacGCCcc-GCCCCUGcgccGGCCCCc -3'
miRNA:   3'- -UUGGGG--CGGccuCGGGGAC----UUGGGGc -5'
23835 3' -64.9 NC_005261.1 + 9804 0.66 0.487966
Target:  5'- cACCCCaGCUGGcccAGCCCagcGAGCCCa- -3'
miRNA:   3'- uUGGGG-CGGCC---UCGGGga-CUUGGGgc -5'
23835 3' -64.9 NC_005261.1 + 83853 0.66 0.478919
Target:  5'- cGGCCCCGCUGGgcugGGCCgggCC-GGACgCCGg -3'
miRNA:   3'- -UUGGGGCGGCC----UCGG---GGaCUUGgGGC- -5'
23835 3' -64.9 NC_005261.1 + 128328 0.66 0.478919
Target:  5'- aGGgCCUGCgGGGGCUCCgaGAgcggcACCCCGc -3'
miRNA:   3'- -UUgGGGCGgCCUCGGGGa-CU-----UGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 39392 0.66 0.478919
Target:  5'- cGGCCCUGgCGGcGaCCC-GAGCCCCa -3'
miRNA:   3'- -UUGGGGCgGCCuCgGGGaCUUGGGGc -5'
23835 3' -64.9 NC_005261.1 + 91483 0.66 0.478919
Target:  5'- cGGCgCCGCCGcGGCCgCCgcccGCCCCGc -3'
miRNA:   3'- -UUGgGGCGGCcUCGG-GGacu-UGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 77563 0.66 0.478919
Target:  5'- cGCCaguggCGCCGccGCgCCCUGGcACCCCGg -3'
miRNA:   3'- uUGGg----GCGGCcuCG-GGGACU-UGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 72138 0.66 0.47353
Target:  5'- gAGCCCCGggugcgacugcacguCCGGGGUgUCCgGGAUCCCGg -3'
miRNA:   3'- -UUGGGGC---------------GGCCUCG-GGGaCUUGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 12203 0.66 0.469954
Target:  5'- cGCCgCCGCCGGugccgccGCCgCUGcugccGCCCCa -3'
miRNA:   3'- uUGG-GGCGGCCu------CGGgGACu----UGGGGc -5'
23835 3' -64.9 NC_005261.1 + 29264 0.66 0.469954
Target:  5'- cGCCgCCGCUGGAggGCCCgCUGcuGACgCCCu -3'
miRNA:   3'- uUGG-GGCGGCCU--CGGG-GAC--UUG-GGGc -5'
23835 3' -64.9 NC_005261.1 + 32524 0.66 0.469954
Target:  5'- cGCCgCGCCcG-GCCCCg--GCCCCGg -3'
miRNA:   3'- uUGGgGCGGcCuCGGGGacuUGGGGC- -5'
23835 3' -64.9 NC_005261.1 + 55927 0.66 0.469954
Target:  5'- cAGCCgCCGCCGGcgcgcAGCCgUUUGGcuCCCCGg -3'
miRNA:   3'- -UUGG-GGCGGCC-----UCGG-GGACUu-GGGGC- -5'
23835 3' -64.9 NC_005261.1 + 27464 0.66 0.468172
Target:  5'- cGCCCCGCgGGgcgggcaGGCCcuccccgggcgcaCCUGGACCgCCa -3'
miRNA:   3'- uUGGGGCGgCC-------UCGG-------------GGACUUGG-GGc -5'
23835 3' -64.9 NC_005261.1 + 14300 0.66 0.461076
Target:  5'- cGGCCCCGaCCGGuAGCCCgaGGAgCgaCGg -3'
miRNA:   3'- -UUGGGGC-GGCC-UCGGGgaCUUgGg-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.